Detail information of GWHGAAEX018359/evm.TU.scaffold_93.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41975.00E-43FOG: PPR repeat
nrgi|672141888|ref|XP_008794789.1|1.85E-62PREDICTED: RNA-binding protein 48-like isoform X2 [Phoenix dactylifera]
trEMBLtr|M0RXK7|M0RXK7_MUSAM2.00E-60Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P06490_001}
TAIRAT5G273005.00E-43pentatricopeptide (PPR) repeat-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010061643111096-
Transcript Sequence

Network for GWHGAAEX018359

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_136930.00016
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.970
SRR2545915Juvenile tuber27.030
SRP108465SRR5643513five period of Gastrodia elata12.240
SRR5643514five period of Gastrodia elata14.720
SRR5643515five period of Gastrodia elata15.180
SRR5643524five period of Gastrodia elata16.800
SRR5643525five period of Gastrodia elata14.830
SRR5643528five period of Gastrodia elata11.500
SRR5643658five period of Gastrodia elata14.650
SRR5643659five period of Gastrodia elata28.360
SRR5643660five period of Gastrodia elata25.750
SRR5643661five period of Gastrodia elata18.370
SRR5643662five period of Gastrodia elata18.720
SRR5643663five period of Gastrodia elata28.240
SRR5643664five period of Gastrodia elata22.700
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.440
SRR6049655Rhizomagastrodiae_C368-T10_good_14.790
SRR6049656Rhizomagastrodiae_C368-T07_good_116.240
SRR6049657Rhizomagastrodiae_C368-T07_good_114.680
SRR6049658Rhizomagastrodiae_C368-T04_good_114.770
SRR6049659Rhizomagastrodiae_C368-T04_good_117.780
SRR6049660Rhizomagastrodiae_C368-T01_good_112.530
SRR6049661Rhizomagastrodiae_C368-T04_good_111.300
SRR6049662Rhizomagastrodiae_C368-T01_good_110.310
SRR6049663Rhizomagastrodiae_C368-T01_good_18.770
SRR6049664Rhizomagastrodiae_C368-T10_good_18.060
SRR6049665Rhizomagastrodiae_C368-T10_good_18.060
SRP279888GastroGastrodia elata tuber 29.38
JuvenJuvenile tuber23.22
Mother_GastroMother tuber of Gastrodia elata 12.84
Mother_JuvenMother tuber of Juvenile 19.94