Gene detail

Detail information of GWHGAAEX018365/evm.TU.scaffold_93.14

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743770806\|ref\|XP_010915690.1\|	7.53E-170	PREDICTED: protein trichome birefringence-like 25 isoform X2 [Elaeis guineensis]
Swissprot	tr\|O04621\|TBL26_ARATH	5.00E-146	Protein trichome birefringence-like 26
trEMBL	tr\|M0SWA8\|M0SWA8_MUSAM	2.00E-170	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P06790_001}
TAIR	AT4G01080	2.00E-145	TRICHOME BIREFRINGENCE-LIKE 26

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000100	851333	867561	+

Transcript Sequence
>GWHTAAEX018365 AAACTTAGCAATATTATATTTTAAATTTTCCGTATCCGCTCTCTATCGTGTCTTCCTCTCCGTATCCGTGAATGATGTGGCCGTTGGGTGGCACTTCTCACAACGTTTTTTTTTTTCTTTTTTCCGAGAGATGAGGAGGCTCTTCACTGTTGCTTCCTCAGCTTCTAGTTATTTACCCTAATTCATTCCCACGGTATTTAAGAGAACCGGGCCCTGCTCTTCACGTCACTGAGAACTTGGAGAAATATGGCGGGAGAGGTGCAGGCTCCATTGAAGAATGGTAAATACATTCTGCTCATGCTCTTCGCTGCCGTTCTCTTTACGCTGTTCGCTTACTTTCTCCTTCGTCCGACCTCCTCTGACTACGACGCTCTCTCCTGCCTTGCTTTATCTGACAGAAGGTCTCAGAAAGTTCTTTCAGGACTATTAATTGAAACTGGAAGCTCGTCTCATGGTCTTCGACTGGCTGGACAGTGTGATCTTTTTTCAGGACAGTGGGTGTATGACCCTTCTGGCCCTTTTTACACCAATACTAGCTGCAATTTGATTGAAGCTCCTCAAAATTGCATGAGGAATGGTCGACCAGATTCAGAGTACCTTTATTGGAGATGGAAACCTAATGGTTGTGAGTTGCCACCATTTAATCCACAGAAATTTATAGCTGCTATGAAGGATAAATCGTGGGCCTTTATTGGCGATTCAATTTTTCGAAATCACATTCAGTCAATGCTTTGCTTTCTCTCTAAGGTTGAGGAACCCGTTGAAATCTACCATGACAAGGCATTCAAATCCCGGACATGGCACTTTCCGGGCCATAATTTGACCGTGGCCGTGATCTGGTCTCCATTCCTGGTGAAGTCCAAAACCTGGGAGGATGATGAGGGCAAGTCAGGAGGCGAAACACAGCTTCACGTGGACATCCTGGATGAGAAATGGACGAACCAGTACCATAAGCACGATTACATAATCTTCTCTGGAGGGCAGTGGTTTTTGAAGACTATGGTGGTGTGGTGGAACAACACCATTGTGGGGTGCCACAACTGCAAGGACAGCAGCTTGAAGGAGCTTGGGGTGGACTGCCCCTACCGCAAATCCCTCAGGACAGCCTACAACTTCATGGCTTCTTCAAAGCACAGACCCCTCGTCTTTTTCAGGACCTGGACACCCGACCATTTTGAGCACGGGGAGTGGTTCAGCGGAGGCCTCTGCAACAGAACTAGCCCCTACGGCGAGGGGCAATACAAAGGAAAGCCGATTGATGCCATCATGCGGAGCATTGAGCTGGAGGAGTTCCAGAAGGCAGCTTCCAGCAGTGGAGGACCTCGCCTCAGCCTGCTCGACACCTTTCATCTCTCGCTTTTGAGGCCCGACGGTCATCCTGGCCCCTACAGGACCTTCCATCCCTTCGAAGGCAAGGGCGAGAATGCCAAGGTGCAGAATGATTGCCTCCATTGGTGCTTGCCTGGCCCTATTGATACCTGGAACCATTTGATCATGAAGATACTCGACGATCAAACGGATTATTCTAGCTATGTTCTCTCCTTTTGATCCCATGTTCTACGATATAGATATTATACTGATTCTTGCCTTCTAGATGAGCATATTCTTCAACCAAATATTTGGAAATCTGTCAGTCGTCCTTGCCTTCGAAGGGATCTGAATATGTTAAGATCTCTAAATAAATAAATCAAAAAATTAATGTAATATCAACAATCTCCCTTTCAAGCCCAGCAAATTATAAAAAAAAAAAAAACCCCTTTATCTATGCCATAAAATTACAACTCTTGTCTTCTAATTTTGGAATAGTTTATTCATAGGTAGTCTTTTATGACTACCTATGAAGGATCCGTGGTTGTAAATGGTGATTTAATTGCGTATGATATTCTATGGAGAAATTGGGAGGATCTTCTTTTGATAATGCTTTTGATGATTTGGCATTTACAGGCTTGTAGTTTGCCAAACCTGATTGGGTTATGGCAAAGTCGTGCTAGTTTGAAAGTTTCTGTCCCCTTGCTCTATCCCTTGATCATATTCAAGTAAATATGAAATGATTTATGTATTCAAATCACTGATGTTACTAGAAAAACTATAAAGCCTCATTGCATTTGTTTGGAATCTGTTTCTCAAATAAATGTGTATGGTGAAACAACTTTACACATTAAAAATAATATTGCCTCCATCATTGCCTTCAGGGAG

Network for GWHGAAEX018365

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14416.5	PMR5N	76	128	6.30E-23
PF13839.5	PC-Esterase	129	418	2.20E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.480
SRP064423	SRR2545915	Juvenile tuber	28.870
SRP108465	SRR5643513	five period of Gastrodia elata	12.130
	SRR5643514	five period of Gastrodia elata	18.890
	SRR5643515	five period of Gastrodia elata	16.770
	SRR5643524	five period of Gastrodia elata	21.700
	SRR5643525	five period of Gastrodia elata	98.750
	SRR5643528	five period of Gastrodia elata	98.400
	SRR5643658	five period of Gastrodia elata	96.170
	SRR5643659	five period of Gastrodia elata	27.780
	SRR5643660	five period of Gastrodia elata	31.340
	SRR5643661	five period of Gastrodia elata	16.360
	SRR5643662	five period of Gastrodia elata	13.170
	SRR5643663	five period of Gastrodia elata	22.890
	SRR5643664	five period of Gastrodia elata	17.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.740
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.860
SRP279888	Gastro	Gastrodia elata tuber	20.82
	Juven	Juvenile tuber	14.94
	Mother_Gastro	Mother tuber of Gastrodia elata	30.50
	Mother_Juven	Mother tuber of Juvenile	20.59