Gene detail

Detail information of GWHGAAEX018369/evm.TU.scaffold_93.26

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262194494\|ref\|YP_003265703.1\|	0	glycoside hydrolase [Haliangium ochraceum DSM 14365]
nr	gi\|406668707\|gb\|AFS50097.1\|	0	beta-D-glucan exohydolase [Elaeis guineensis]
Swissprot	tr\|A5JTQ3\|XYL2_MEDSV	4.00E-37	Alpha-L-arabinofuranosidase (Precursor)
trEMBL	tr\|J9Z414\|J9Z414_ELAGV	0	Beta-D-glucan exohydolase {ECO:0000313\|EMBL:AFS50097.1}
TAIR	AT5G20950	0	Glycosyl hydrolase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000100	1537804	1545926	-

Transcript Sequence
>GWHTAAEX018369 GAGCAGCTCCTTCCATCTGCTCGAACACCTCGACGCCCTGAGCTTTCTTCAAAAACAGGACTGTTTTAATGTTGAACCGTAAAACCCGCGGGTTTTTAACCGGTTCAATGCAATTCGATTTTTTTCTTTTCTTTGAACCAGTAACCCGGCTGTTTCGCCTTTGAACCGGCCAGTCCGATTTTGTATTTTCAATTTTCTTAACTAAATACAAACACAAAATATTTCTTAAAAAATACAAACACTAAATATTTTAAAAAAATTACAAACTCTAAATTTTTCAAACTTTTATTAGTTTTCGGGGAAATAAAATTTGTTTCAAACTCAATCTCTTATTCACAGTTCTATCTAACATTAATACAGCAATTTTAAATTACACTAAAAATATGAAACTGTAAATTTTTTTCTTTTGAATTTTATGAGGGAAGAGTTTATGTTGAGGAATTTGCGGTTGTAATTTTTTTTTTGGGAAGAAATTGAATTTTAGTGAATAAAATATGAGTGATGAAAACTTGAATTTTAATCTAAACCCTAATCTCTAGATCTAAATGCCGGTGGCAAATTTTTCAACCCCACTGCAAATTTCTGTCTCCTTCTGATGTCCGCTGGTTGGCCGCACAGCATTTATACGCAGCTCTACGTTTTGCTGCAGTCTTGCTCCTCTTGTATAAGTCGCTCAACTTGAACTCGAATTCTCCATTCTCCAATGCGCACCGGCCTCATTCTTTGAATCGGGTTTTATTATTACACGGGAATGGAGAAAACTGCATCCCCAAATTCTGTATTTCTTCTGGTATTCTTTGCTTGTTTGATTTCTGCTGAGGGAGCAGAGTATTATAAGTATAAAGACCCAAAGCAACCACTGAATGTTAGATTGGACGACCTTTTAGGAAGAATGACACTTATTGAAAAGATTGGCCAAATGGCACAGATCGAACAAAAAAATGCTTCATTTGAAGTGATCAAAAACTACTTTATAGGTAGCGTACTGAGTGAAGGAGGCAGTGCTCCCGCACCGCAAGCGCCAGCAAGAACTTGGGTGGATACGGTGAATGAGATCCAGAGGGCAGCTCTCTCTACTCGTCTTAGTATTCCAATTATTTATGGAATTGATGCTGTTCATGGCCACAACACAGTTTATAAAGCTACCATATTCCCACATAATATTGGACTTGGAGCTACCAGGGAACCAGGCCTTGTGAAAAAAATTGGTGCTGCAACAGCTCTTGAAGTCAGAGCAACAGGCATTCCTTACGTCTTTGCGCCATGCATTGCGGTGTGCAGAGATCCTAGATGGGGCCGTTGTTATGAAAGCTACAGTGAAGATCCAAAGGTTGTACAAGATATGACGGAAATTATCCCAGGATTACAAGGAGAAATTCCAGAAAATGCTATCAAAGGAGTTCCCTTTGTTGCTGGAAACAAAAAAGTTGCTGCTTGTGCTAAGCATTATGTTGGTGACGGTGGAACTAACCTGGGCATTAATGAGAATAATACAATTGCTACTTACCACCAGCTTCTTAGTATTCACATGCGCCCTTATTTCAATGCTATTATCAAAGGTGTATCTTCTGTGATGGTTTCTTATTCGAGTTGGAATGGGGTAAAAATGCATGCAAATCATTACTTGTTGACCGACTTCCTCAAAAATACTCTTCGTTTCAGGGGATTTGTAATCTCAGACTATGAAGGCGTTGATAGGATTACATCACCTCCTGGTGTCAATTATACATTCTCTCTCCAGGCTGGGGTTCTTGCCGGCATTGATATGATAATGATTCCATATGACTACCCCCGGTTCTTTGAGACCTTCACAGAATTAGTCCAAAAGAATGTGATTCCCATGAGTAGAATCAATGATGCAGTTAGGAGGATACTTCGGGTCAAGATTACAATGGGCCTCTTTGAGAAGCCCTTCGGAGATTATGGCCTGGCTGATGAAATTGGGAAGCAGGAGCATAGAGAACTTGCTAGAGAAGCTGTAAGGAAATCACTAGTGCTATTGAAAAACGGGAAAACTCCAGGAGAGCCACTCCTACCACTCCCTAAGAAGGCAAAAAGAGTACTCGTTGCTGGAAGCAATGCTGATAACCTGGGATACCAGTGCGGAGGTTGGACGATCGAGTGGCAAGGATTTAACGGCAACAATCGAACAACTGGAACTACGCTGCTTGACGCGGTGAAAGCGACGGTGGCTCCCAACACTGAAGTTGTCTATTCAGAGGACCCTGGTGAGGAATTTGTTCTGAGCAATGAATTTTCTTACGCGATTGTTGCCGCCGGGGAGCCTTCGTATGCCGAGACTTTTGGGGACAGCATGAATCTCACCATTGCTGAACCCGGTCCTCGCGTCATCAGGAATGTGTGCAAGCACGTCAAGTGTGCAGTGGTCATTATATCTGGCAGGCCTGTAGTGATTGAGCCATACGTTGTATTTATTGATGCGCTTGTTGCTGCCTGGTTGCCCGGTACTGAAGGCCGCGGCATGACTGATGTCCTCTTTGGGGACTATGGGTTCACAGGAAAGCTCCCAAGGACATGGTTTAAGTCTGTTGATCAGCTGCCAATGAATGTTGGCGATGCCCATTATGATCCTCTTTATCCCTTTGGTTTCGGGCTGACAACCGAGCCGGTGAAGACAATCATCTATTGAGAAGTTCTTTTAACTTGATGGGGGTTTTGGGTTATTCTTCAAAGTGTTGTAGCTACAACTCTGAATAAGAGGCTTCGATGTTGTTGGGGATGTTTTTTATTTTTTTATTTTAACATTCCGTATTGTTCCTTGTATTGTATTCTATTCTATGTGAAATGGTCACTACCATCCGCCAACTCTAGCTTGACTAATTTTACATGTTTTAAGGGCAGCACTTTTAAGTCCA

Network for GWHGAAEX018369

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00933.20	Glyco_hydro_3	49	377	1.80E-66
PF01915.21	Glyco_hydro_3_C	414	623	9.20E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05349	bglX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Cyanoamino acid metabolism	map00460
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	41.920
SRP064423	SRR2545915	Juvenile tuber	115.950
SRP108465	SRR5643513	five period of Gastrodia elata	68.730
	SRR5643514	five period of Gastrodia elata	54.330
	SRR5643515	five period of Gastrodia elata	55.710
	SRR5643524	five period of Gastrodia elata	58.540
	SRR5643525	five period of Gastrodia elata	26.830
	SRR5643528	five period of Gastrodia elata	27.810
	SRR5643658	five period of Gastrodia elata	50.530
	SRR5643659	five period of Gastrodia elata	55.960
	SRR5643660	five period of Gastrodia elata	45.730
	SRR5643661	five period of Gastrodia elata	60.120
	SRR5643662	five period of Gastrodia elata	42.530
	SRR5643663	five period of Gastrodia elata	52.210
	SRR5643664	five period of Gastrodia elata	35.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	72.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	68.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	82.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	63.880
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	42.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	51.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	62.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	72.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.770
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	80.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	80.170
SRP279888	Gastro	Gastrodia elata tuber	29.63
	Juven	Juvenile tuber	43.02
	Mother_Gastro	Mother tuber of Gastrodia elata	21.11
	Mother_Juven	Mother tuber of Juvenile	14.14