Gene detail

Detail information of GWHGAAEX018372/evm.TU.scaffold_93.30

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|328953373\|ref\|YP_004370707.1\|	1.00E-40	penicillin-binding protein [Desulfobacca acetoxidans DSM 11109]
nr	gi\|743848603\|ref\|XP_010939400.1\|	2.09E-102	PREDICTED: uncharacterized protein LOC105058229 [Elaeis guineensis]
trEMBL	tr\|M0T4M1\|M0T4M1_MUSAM	4.00E-81	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P06230_001}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000100	1705603	1743972	+

Transcript Sequence
>GWHTAAEX018372 ATGCAAGCTACTCAACGCATTTGACGCAAGTGGGCACAGTAGCGTCGGGGTAATGAGGAAAGGCTCAGGGGACGGGCCGCTAGCATGGGTGCTTTCGTGGAGGACGACCGCTGGAGTAAGACCGGGTAACAGTGTTTCGCCTAAACTCGTCACAGATTCACAATAAACTAGTTAAAGAGCTGCCATTCCAATCTTTTAGATTTAAATTGCCCGAATTACTTACTTTTGAGACCCGTCCTCGTCGAGAATTTCCCGTCCTGGAAGAACGAAGGAATTCTGCAATTGTAGCTGCCATGGAGGCATCTCCTAACGTTTTAAATGCCAGTCCTTCACTACTGGCCTCTGGCTCCATCGCAACCGTCGCCAGAGGTTCTCAATATCCAAATACCGCCTCCTCCACAATACCCCACGGCCGGCCACCACAATGTCTGTTCTTTCTTCTGCTCTCACCTTTTCCTTTGCAGATGGCCACCCTAGCCGCTTCCGCCTCACAGAGACCGCCTCTGCCCGATTCGCTGCACCGATAGCGGCTAATTACTGCCGGGAAGTTCGATCACTTTGTGTTCTTCGAAATTCTGCTTTTGCATCGATCGAACAGTCGAAACCCTGGACAAGAAACCTCTTTTTATACGATCCCATTTCATTCCTCTTGGACGGAGCTGTCTCTTTACTGCGACTTTTCAGTGTGCTACCTCCCAATTTCTGTAATCGTTGGCAACGTCTTGTCGAGATCCCGGATACAGAGGTAGAGTCTTGGCTCGAGCGACTGCCCTCCCACCTTATCCAGGCGGTAACCGCCTCGGAGGATCAACGCTTCTTCTATCACCATGGTGTTGATTTTTACGGAATTGCACGAGCTGTTGTTAAATACCCTAATGGAGGAGGTGGGAGCACCATCACTCAGCAGCTTGTGAAGATAGTCTTTCTGTCTAGTGAGCGGAAACTTTCAAGAAAATTTGTTGAGGGGCTATTATCCCTTGTGGTAGAGAAGAGGATTTCAAAATGGAAAATATTGTATTCATACTTGAAAAAGATGTACTGGGGAAATGGAATCTATGGTGTTGAGTCAGCCTCTCAGTTTTACTTTGGAAAGAGCCCTTCTTCTCTTTCTATAGGAGAATCTGCAATTCTAGCTGGAATTTTGCCTTCTCCAGAATTTATAAATCCAAGGAAAAATCCTAAAAGATCCAAGTCATCCCAGGCTAAGGTATTAAAGAGGATGGTGTCTGCTGGATTTCTTGACATGGAAAAAGCCCTCGAGATTGCAAGGGAATCCTTCTACTTGTGTTCTGAAAATAAGGTGATTTTAGATATGAAGTGTTAGAACTATTCAAATGAACTCATTCATGGATGCTGTCAGAAATCAGAATTTAGGTTACTGTGCTATTTAGACTGTTTATTATTTTAAGCTTTAAAATTTGATGTATTTCTAAATCTAAACTGTCTATCATAGAAATATAAGCTTGCTGATATATTGCCAAATTTTCTTATATAGACATTATGTTTGAAATTTAAATATATATATTTGATGCATAGCAATTTGAAAGCAA

Network for GWHGAAEX018372

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00912.21	Transgly	112	266	1.80E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.260
SRP064423	SRR2545915	Juvenile tuber	6.530
SRP108465	SRR5643513	five period of Gastrodia elata	5.750
	SRR5643514	five period of Gastrodia elata	6.300
	SRR5643515	five period of Gastrodia elata	5.800
	SRR5643524	five period of Gastrodia elata	6.340
	SRR5643525	five period of Gastrodia elata	8.560
	SRR5643528	five period of Gastrodia elata	6.970
	SRR5643658	five period of Gastrodia elata	7.570
	SRR5643659	five period of Gastrodia elata	5.520
	SRR5643660	five period of Gastrodia elata	6.760
	SRR5643661	five period of Gastrodia elata	5.980
	SRR5643662	five period of Gastrodia elata	6.150
	SRR5643663	five period of Gastrodia elata	6.330
	SRR5643664	five period of Gastrodia elata	7.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.000
SRP279888	Gastro	Gastrodia elata tuber	7.02
	Juven	Juvenile tuber	19.58
	Mother_Gastro	Mother tuber of Gastrodia elata	6.24
	Mother_Juven	Mother tuber of Juvenile	12.51