Gene detail

Detail information of GWHGAAEX018376/evm.TU.scaffold_93.33

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743860661\|ref\|XP_010943073.1\|	1.12E-139	PREDICTED: bZIP transcription factor TRAB1 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9M7Q4\|AI5L5_ARATH	1.00E-107	ABSCISIC ACID-INSENSITIVE 5-like protein 5
trEMBL	tr\|M0TBK0\|M0TBK0_MUSAM	9.00E-135	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P30550_001}
TAIR	AT1G49720	3.00E-78	abscisic acid responsive element-binding factor 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000100	1860231	1877104	-

Transcript Sequence
>GWHTAAEX018376 AAAAATACTTCTCCGGCCCCACTCCCTTTCGAGATGAAGTCCCATTCCCACCGGAGCCGACATCTGTCGCAACTGCACTCATCGCAGAAACCAAAAAAAACCCGCCGGCCACTGTTCTTCATCTCCCTCCTCTCGATTTGTATGATCTCTGAAATTTTCGCTCTGGTTGTTTCCGGATTTTAACTAGGACATGTATTAGTAGGGTTTTAGTACCGATTCAGGGCCCTTTTCACAGTGAGTTGATGATCTTCATAAAGTGAGCGTTCGTCTGCTTCTTAGCTAAAGAGTCCGCGAAAATTTGGGCATAATCGACTCAGAAATATGAGCTTCAGAGGCGTCGGAATCGATGGCACCGACGTTCGGCAGCAACCGGATGGGGCTGAGCTGCCACTGACGCGGCAGCTCTCGATCTACTCTCTAACCTTTGACGAGTTTCAGAGCACGATGGGTGGCCTCGGTAAGGACTTCGGATCGATGAATATGGACGAATTCCTAAAGAACATCTGGACTGCAGAAGAAAGCCATGTTATGGCCGCTTCTCTTGGCGCCCCTAACGGAGGAACTAGCTGCGCTCATCCTGGACTTCAGCGTCAGGGATCGCTTACCCTTCCTAGAACACTCAGCCAGAAGACCGTTGACGAAGTGTGGCGAGATCTTAGCCGCGAGAGTGCTGGCGGAGTGGGCGGATCCGAATTCCAGCAGCAGCAGCGGCAGCCGACGCTGGGCGAGATGACTCTCGAGGAGTTCCTTGTTCGAGCAGGGGTTGTCAGGGAAGAGATTTCTATTCCAGGGCCTCCCGGAATTTCTATTGACAATAGTGCCAATGGCGCCTTTTACGGAAATTCTTCTTCCATGACATCTGGACACAGCAATAATGGGCTTTCCCTTGGGTTTTCTCAGGCAGTAGGACGCAGTAACATTGCTATGTCTGCCACTGGCACGATGCCATTTGCAACTCAGTTGCCATTGGCTAGTAATGTGGATTTCGGGAGCTCTCAGGGATTGCGAGGTGGTGAGATCATCGGTATTGGGGATCCTGTTATCAACAATGGGATGATCCCTGAAATGGTTGGCTTGAGAGGAGGTGTCAATATTGTTACATCAGTTTCTCCTGCCAGCCAGGTTCTTTCAGATGGCCTTTCAAAGGGGAACGGAGATCTTTCTTCTTTATCTCCAGTGCCTTATGTTTTCAATGGAGACTTGAGGGGAAGGAAGTCTAATGGAACTGTGGAAAAAGTTGTGGAGAGGAGGCAAAGGAGAATGATAAAAAACAGAGAATCAGCTGCGAGGAGCCGGGCCAGGAAGCAGGCTTACACGATGGAGCTAGAAGCTGAAGTAGCTAAACTTAAAGAACAAAACCAGAAATTACAAAAGAAGCAGGCTATGATCATGGAAATGCAGAAAAATCAGCAGGTTTTGTTGGAGGCAAGCAATCAGCAGCGAGAGGCTAAGCAGCCTTGCTTGAGGAGGACAGCGACTGGCCCATGGTAAAAACATAAGTTAGTGAAATACTAACATTCGCACCGTTTCATAAACAGTTGAATCTTTGAGATTATTGTCAAAATGGTCCATTGATTGTTACAGTTTATTCATTTTAGTCGTTGACTCTTACATATGAACAAAAATGAAGGACTAAAATAAAAAAAATTACTAGAGTCAATAGACTATCCTGACAATTGTCTCATTAAATCTTTAGAGCGCGTGTCGTTCTGTAAATTAAGGAAGCTCTGTAAATGTTGTGTATTTTTGTCCGGGAAAAGTTCTTTTGAGTTAGAATATCTTGACTAATTGCAAATCAGGACGGGCTTCATAATCTTTATTTCAAGTTTTGTACCTTGATTCTCGTATAGATCTTGAAATGACTCAAAAGGATTATAAAGGCCATCCGTATTTATAATTGGGTTCAGGACCCATTTTCTTTTTCAGTTATCCTTGTATCTTTTTTTGCATCCTAATTTCTTGTTTTGATGCTGGAGCAGTTCATCCGTTGCTTCAGTTTCCCTATTACTAAAGCTTGCAATAAGATCAGGCTTGCGTGACGCATGAATTTCTTTCATTAAACCTGGAAGAAAAACAAATATTTTATATCTTGATTGTGAGCACGAGAT

Network for GWHGAAEX018376

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.20	bZIP_1	309	360	1.40E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
K14432	ABF	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.790
SRP064423	SRR2545915	Juvenile tuber	28.030
SRP108465	SRR5643513	five period of Gastrodia elata	16.820
	SRR5643514	five period of Gastrodia elata	15.210
	SRR5643515	five period of Gastrodia elata	15.300
	SRR5643524	five period of Gastrodia elata	14.010
	SRR5643525	five period of Gastrodia elata	23.710
	SRR5643528	five period of Gastrodia elata	16.360
	SRR5643658	five period of Gastrodia elata	23.310
	SRR5643659	five period of Gastrodia elata	11.130
	SRR5643660	five period of Gastrodia elata	11.470
	SRR5643661	five period of Gastrodia elata	12.910
	SRR5643662	five period of Gastrodia elata	7.690
	SRR5643663	five period of Gastrodia elata	9.010
	SRR5643664	five period of Gastrodia elata	10.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.870
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.540
SRP279888	Gastro	Gastrodia elata tuber	5.68
	Juven	Juvenile tuber	10.34
	Mother_Gastro	Mother tuber of Gastrodia elata	17.08
	Mother_Juven	Mother tuber of Juvenile	11.49