Detail information of GWHGAAEX018393/evm.TU.scaffold_93.71


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|124268989|ref|YP_001022993.1|2.00E-11RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
KOGKOG01182.00E-140FOG: RRM domain
nrgi|695009424|ref|XP_009391347.1|0PREDICTED: polyadenylate-binding protein RBP47-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LEB3|RBP47_NICPL1.00E-151Polyadenylate-binding protein RBP47
trEMBLtr|B7E560|B7E560_ORYSJ2.00E-176cDNA clone:001-024-G08, full insert sequence {ECO:0000313|EMBL:BAG87507.1}
TAIRAT1G474902.00E-140RNA-binding protein 47C

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010038870343930217+
Transcript Sequence

Network for GWHGAAEX018393

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_11672331.00E-11
PF00076.21RRM_12603292.60E-14
PF00076.21RRM_13624249.30E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms231.500
SRR2545915Juvenile tuber222.680
SRP108465SRR5643513five period of Gastrodia elata47.010
SRR5643514five period of Gastrodia elata36.770
SRR5643515five period of Gastrodia elata50.240
SRR5643524five period of Gastrodia elata37.640
SRR5643525five period of Gastrodia elata28.740
SRR5643528five period of Gastrodia elata40.360
SRR5643658five period of Gastrodia elata22.930
SRR5643659five period of Gastrodia elata62.080
SRR5643660five period of Gastrodia elata66.210
SRR5643661five period of Gastrodia elata63.470
SRR5643662five period of Gastrodia elata64.380
SRR5643663five period of Gastrodia elata68.910
SRR5643664five period of Gastrodia elata54.810
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1110.630
SRR6049655Rhizomagastrodiae_C368-T10_good_1110.850
SRR6049656Rhizomagastrodiae_C368-T07_good_1110.600
SRR6049657Rhizomagastrodiae_C368-T07_good_1121.960
SRR6049658Rhizomagastrodiae_C368-T04_good_1157.050
SRR6049659Rhizomagastrodiae_C368-T04_good_1169.180
SRR6049660Rhizomagastrodiae_C368-T01_good_1128.770
SRR6049661Rhizomagastrodiae_C368-T04_good_1148.200
SRR6049662Rhizomagastrodiae_C368-T01_good_188.220
SRR6049663Rhizomagastrodiae_C368-T01_good_1128.080
SRR6049664Rhizomagastrodiae_C368-T10_good_175.700
SRR6049665Rhizomagastrodiae_C368-T10_good_175.700
SRP279888GastroGastrodia elata tuber 126.16
JuvenJuvenile tuber58.55
Mother_GastroMother tuber of Gastrodia elata 70.13
Mother_JuvenMother tuber of Juvenile 65.23