Detail information of GWHGAAEX018396/evm.TU.scaffold_94.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|219847899|ref|YP_002462332.1|8.00E-06DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM 9485]
nrgi|743782949|ref|XP_010921282.1|5.05E-111PREDICTED: protein NEN4 isoform X1 [Elaeis guineensis]
Swissprottr|F4JJ23|NEN4_ARATH8.00E-77Protein NEN4 {ECO:0000303|PubMed:25081480}
trEMBLtr|A0A067DVZ1|A0A067DVZ1_CITSI2.00E-96Uncharacterized protein {ECO:0000313|EMBL:KDO47028.1}
TAIRAT5G077105.00E-72Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000929228594375+
Transcript Sequence

Network for GWHGAAEX018396

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00929.23RNase_T131496.90E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.980
SRR2545915Juvenile tuber3.890
SRP108465SRR5643513five period of Gastrodia elata3.630
SRR5643514five period of Gastrodia elata4.120
SRR5643515five period of Gastrodia elata3.830
SRR5643524five period of Gastrodia elata3.830
SRR5643525five period of Gastrodia elata2.090
SRR5643528five period of Gastrodia elata4.850
SRR5643658five period of Gastrodia elata4.500
SRR5643659five period of Gastrodia elata1.550
SRR5643660five period of Gastrodia elata0.950
SRR5643661five period of Gastrodia elata1.100
SRR5643662five period of Gastrodia elata2.290
SRR5643663five period of Gastrodia elata1.500
SRR5643664five period of Gastrodia elata1.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.970
SRR6049655Rhizomagastrodiae_C368-T10_good_12.310
SRR6049656Rhizomagastrodiae_C368-T07_good_14.330
SRR6049657Rhizomagastrodiae_C368-T07_good_13.740
SRR6049658Rhizomagastrodiae_C368-T04_good_13.540
SRR6049659Rhizomagastrodiae_C368-T04_good_14.540
SRR6049660Rhizomagastrodiae_C368-T01_good_13.580
SRR6049661Rhizomagastrodiae_C368-T04_good_14.870
SRR6049662Rhizomagastrodiae_C368-T01_good_13.750
SRR6049663Rhizomagastrodiae_C368-T01_good_14.820
SRR6049664Rhizomagastrodiae_C368-T10_good_13.770
SRR6049665Rhizomagastrodiae_C368-T10_good_13.770
SRP279888GastroGastrodia elata tuber 4.22
JuvenJuvenile tuber1.70
Mother_GastroMother tuber of Gastrodia elata 8.13
Mother_JuvenMother tuber of Juvenile 4.06