Gene detail

Detail information of GWHGAAEX018403/evm.TU.scaffold_94.12

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743843483\|ref\|XP_010938081.1\|	0	PREDICTED: uncharacterized protein LOC105057241 isoform X2 [Elaeis guineensis]
trEMBL	tr\|M0SD81\|M0SD81_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P09640_001}
TAIR	AT1G17360_1	1.00E-21	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000092	416095	435841	-

Transcript Sequence
>GWHTAAEX018403 GTAATTGCTTACGTAAACAGTGGCATATTCTTCTCCCCGACAATCTGGCTTCGTGCTTTCCGGCTTTTTCAACACTCTTTCTCCTATTTTTTAGGTTATTTAGTTGTGATTTTTACCTGATTCTTTATCATTACCAAGTCTCGGTAATTCAGCCAAGAGTGACATCGACAACGATCCATTAGGGTTTCTTTGTCTTGATCTTGTAACGCTGCATTGCCTGATTTCTAAGTTATTTTACAGGGCCTTCTAAGAGCAGCGTTTAGAGTATTTGTTTTCATTAAAATAATTGAAAACTATGGAGAGAAAAATATCTGAAAATGCAGTTCTGGACTTTGCTGCTTTTCATGTATCTTGGCCGGATAACAGCTATGAAACACTTATTTGCAGCAATTGCATTATGGAAAAATTAGATGGTGGTCCTCTGGATCAGCTAGCTACACATTTAACGGAAGCAAGAGAATCATGTTCCAATCCATCAGATGGCACTTTCAAGCTGCAGCTTGATGCAAGCATTGAATCCCCATCATGGTTTACCAAATTTACATTGGAAAGATTTTTGCATGTTGTTAATGTGCCCAATGCACTTAAACTCGCCAATGCTATCATGGACGAAATTCAACAATTGGAGGAAACAAAGAGGTTTCACATTGCTTTATATGCAAAGGACAACTCAAATCAATTTGGGGGTGGAGGCATAGATGTCAGCTATTTGAATGATCTGGGCTCAACTCAACAAATAAAAGCTGAAACGGCATCATTTGATGCTACAAAGAATGAATTACTGAGGGCTATGGACTTGAGACTCACTGCATTGAAGGAAGAATTAGTTGCTTCTTTCAGTTATGCAGCAGGTGCTTCTTGCTGTAGCAGCAAAATTTCTGATTTAGCTTCATTTGCTCAGCATTTTGGAGCAGTGGAATTAAGCAATGTATTATTGAAAATTTTGGAGGTGTGCCCGAATAACCTGCATTTTGACACAACCATCAAGCCACAGACATCCTTGAATGATTCAGGAAATGTCAACCTCACATCGATGGGCAGGCTTTGCCTTGAGGCAAAACATGATGTATTTAAACCTGAAATGGTTCTAGTATCTCCTGCCAAAGTTGCTCAAGCTGAGCGACTGAACTCATCAGAGAGTGAGGATTCCTCAGATTCAAGTGATACAGATAGTCCCAATGGTGAAAGAAGTCGGCCAGTAGTAAGGTCAGCAACACCAAGAAGATCTGCTTCGCCTATGCGGCGGGTTCAGATAGGTAGATCTGGTCCTAGAAAGTCTACTGCAATTACCATTAAGAGCCTCAATTTCTATTCATCCAGAGAAAAAGCTGTATCTAGTGTGGATGCTGATCGAACCAATAGTGTGGATGATGAAGTGGAATTTTTACCAAAGAAGGCTGAAAATAATCTCTCTAGAATGAGCGTTCAAGATGCTATCAGCCTCTTTGAGCGCAAACAAAAAGATGAAACCTCAGATATTCAAACGAGGAAAACAGGGGTTTCCATTAGCACCAGTAAATCTGTTTTGAGAAGATGGAGTGCTGGTATGGGTGATTCTTTCAATTATTCGACACAAGAACAAGAATTAGACTATTGTCATCAAATTGCTCCTTGTAACTTGGACCGTGAGGCTGAGGAGAAAAAAGAAGACGACCTGAAAGAAAAGCCTTCAAATCCAGAAACTATTGAAGTTGTGCCTGCAGAAATTGTAAGGGAAGGGCCATTTCAAGGCAATACTCCTGAACCTGTTGTTACAGCCAATGTTTTGGAGGTTAAAGATTGTACATCAGCTGAATGGAATCAGCAGAAGGAGGCAGAGCTAAATGAGATGCTCATGAAAATGATGGAGCGCAACAATTTCAGTAAATACCGTCATTCCAAAGTCAATAGTGATGGGTTCTCAGATACATCTGCAGATCAAAGGGGGGGATTATACACCCAATATAGAGAGAAAAGAGATGAGAAACTTCGATCTGAGAATATTAGAAATCTTTCAGCGAAGCAAGCTCAATTTAAGGTCATGCATGAGACATTAGAGCAGAGCAAAGCAGCAATGGTATCCAAAACTGGGAAACCTGTGGTGAAACCAGAATCTGCAGTCCCTTCTCAGAAGCCAAGGAGAAATTCTGCTCCTGCTGCTATATTGAAGAAGGAAGTTAGTAAGACGAGTAGCACAAAAAATCTGTTGCTTAAATCATCATCTCTAAAGACTGAGAATGCTTTGCCATCAGGACCTTTGAAGAGAAGGGGTGGAACGCCACCAGCTAAAAGCTCTCTTGTGGTTTCTTCCAGTGGTAGTACACCAAGCCGCCAAAGACCGCCATCATCAAATTCTATAGGTCAGCCAAGCCCCAGGTCTGTAAAATCAGTAGAACGTGTGAAAGGAAATAAAAGTGATAGTAGTGTCCAAACTGCTGCTAAGCCGCGTTTGAAACGGCAGGAAGATAAACAACTGAAACAAATGGCAAAGAACAATAAAGCTGTGAACCCAAGAAGTTCATTAACAGGGGAAGATTGTGGCGAAGTGTCTAAACCATCTCTTCCAAGCAAGTATACAAAGAAAAGCAGTGTAGTGCCCGTGGAATCAAAGCCCTTCTTGAGAAAAGGTTCTGGAATCAATCCTAGTATTGGAGTTTCAGCTGCTAAGGCAAAGGAAGCTAGAGTTCCAAAGTCGGGTGATTCCTTAAAAAACAGTGGAAATATTGTTCATCCAGGAGAAAATGATTCTATTTCACCACCAGTTCTGTCAACTATGAAGGTAACCGAGGATGATCTTGGTCAAACAACTGTGGTGGATGATTCTGTAGCAGCTCCACCGGATAATGATGTGTGCATTGAAACTGCAGAGAATAATGATGGTATTCCAAAAGGAACTGATAATGTTACAGAGAACTCAATGAATCCGCTGATTGCAGAGATCCAGCATGATGATGATTTGGGCATCTCATCAGCTGCATGGGTGGAAACAGAACATCAGGAATATTCTCCATCTCGCAACAATAGGCTACATGGAGTTTCTCCCACGATTGCTCCAGTAGCATCATCAAGTTTGCGGGTGCGCCATTCTTTGTCGCAAATGCTACAGACTGAGAACGGTGAACCAGAGATAATTGAATGGGGAAATGCTGAGAATCCTCCTTCATTGGTGTATCAAAAAGATGTCCCTAAGGGGTTTAAAAGACTTTTAAAATTTACACGAAAGAGCAAAGGTGAGGGGAATTCAACAGGCTGGTCAAGCCCTTCAATTTTCTCTGAAGGAGAGGAAGAACTTGAAGAATCTAAAGCAGCAAATAAGACTTTGGAAGCTTTGCAGCGAAAAGCCTCCCACCAAGCTAAGGGTTATGAGCAGCCAACAAACATGGCCAGTGAAAGTTATGATTTTGGGAATTCTAGCAAAAGGTCCATGGACTACTGGATTGTCCATGACGCTTCTTCAGGCTCGGACAGGCTGCGCGGCGGCGGCGGCGGCGGCCACAAGTCAACAGGAACAACAACAGCTGCTACGGCATCAAAAGCAACACGGTCATTCTTCTCGCTATCATCCTTCCGGAGCAGCAAAGCAAACCGATAGGCCTTTTTGCTCATTTTGGCAACGTAAATTATTGAGGTATTGGCTTCCTATACTATATAGATTTAGAGTGGCCTCTGCTCCTCAATTAGCAACTTTTATTTTCTGTTCTTGATTGTAAATTCTTAACATCGGAAGAGCACAGTTGTGTTATATTTCTCCAGAATTATTGACATGATTTTGATCGGGCGGTCATCCGTTGCGTTTGCTTCTCTGTGATGCCGTTTAGATTTCATATTTTTTCTTCTTTCTGTATACACATATTAAATATTTCTGTAAATTCCCAC

Network for GWHGAAEX018403

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX018403
MERKISENAVLDFAAFHVSWPDNSYETLICSNCIMEKLDGGPLDQLATHLTEARESCSNPSDGTFKLQLDASIESPSWFTKFTLERFLHVVNVPNALKLANAIMDEIQQLEETKRFHIALYAKDNSNQFGGGGIDVSYLNDLGSTQQIKAETASFDATKNELLRAMDLRLTALKEELVASFSYAAGASCCSSKISDLASFAQHFGAVELSNVLLKILEVCPNNLHFDTTIKPQTSLNDSGNVNLTSMGRLCLEAKHDVFKPEMVLVSPAKVAQAERLNSSESEDSSDSSDTDSPNGERSRPVVRSATPRRSASPMRRVQIGRSGPRKSTAITIKSLNFYSSREKAVSSVDADRTNSVDDEVEFLPKKAENNLSRMSVQDAISLFERKQKDETSDIQTRKTGVSISTSKSVLRRWSAGMGDSFNYSTQEQELDYCHQIAPCNLDREAEEKKEDDLKEKPSNPETIEVVPAEIVREGPFQGNTPEPVVTANVLEVKDCTSAEWNQQKEAELNEMLMKMMERNNFSKYRHSKVNSDGFSDTSADQRGGLYTQYREKRDEKLRSENIRNLSAKQAQFKVMHETLEQSKAAMVSKTGKPVVKPESAVPSQKPRRNSAPAAILKKEVSKTSSTKNLLLKSSSLKTENALPSGPLKRRGGTPPAKSSLVVSSSGSTPSRQRPPSSNSIGQPSPRSVKSVERVKGNKSDSSVQTAAKPRLKRQEDKQLKQMAKNNKAVNPRSSLTGEDCGEVSKPSLPSKYTKKSSVVPVESKPFLRKGSGINPSIGVSAAKAKEARVPKSGDSLKNSGNIVHPGENDSISPPVLSTMKVTEDDLGQTTVVDDSVAAPPDNDVCIETAENNDGIPKGTDNVTENSMNPLIAEIQHDDDLGISSAAWVETEHQEYSPSRNNRLHGVSPTIAPVASSSLRVRHSLSQMLQTENGEPEIIEWGNAENPPSLVYQKDVPKGFKRLLKFTRKSKGEGNSTGWSSPSIFSEGEEELEESKAANKTLEALQRKASHQAKGYEQPTNMASESYDFGNSSKRSMDYWIVHDASSGSDRLRGGGGGGHKSTGTTTAATASKATRSFFSLSSFRSSKANR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.420
SRP064423	SRR2545915	Juvenile tuber	25.250
SRP108465	SRR5643513	five period of Gastrodia elata	21.760
	SRR5643514	five period of Gastrodia elata	29.290
	SRR5643515	five period of Gastrodia elata	25.130
	SRR5643524	five period of Gastrodia elata	27.600
	SRR5643525	five period of Gastrodia elata	17.910
	SRR5643528	five period of Gastrodia elata	20.430
	SRR5643658	five period of Gastrodia elata	21.270
	SRR5643659	five period of Gastrodia elata	16.170
	SRR5643660	five period of Gastrodia elata	12.580
	SRR5643661	five period of Gastrodia elata	13.690
	SRR5643662	five period of Gastrodia elata	11.850
	SRR5643663	five period of Gastrodia elata	15.370
	SRR5643664	five period of Gastrodia elata	11.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.890
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.580
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.580
SRP279888	Gastro	Gastrodia elata tuber	17.05
	Juven	Juvenile tuber	19.54
	Mother_Gastro	Mother tuber of Gastrodia elata	15.39
	Mother_Juven	Mother tuber of Juvenile	11.89