Detail information of GWHGAAEX018406/evm.TU.scaffold_94.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|188575624|ref|YP_001912553.1| | 1.00E-49 | DNA (cytosine-5)-methyltransferase PliMCI [Xanthomonas oryzae pv. oryzae PXO99A] |
| nr | gi|743760320|ref|XP_010936296.1| | 0 | PREDICTED: DNA (cytosine-5)-methyltransferase 1B-like [Elaeis guineensis] |
| Swissprot | tr|B1Q3J6|DNM1B_ORYSJ | 0 | DNA (cytosine-5)-methyltransferase 1B |
| trEMBL | tr|B4XTS8|B4XTS8_ELAGV | 0 | Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417} |
| TAIR | AT5G49160 | 0 | methyltransferase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000092 | 588052 | 598780 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018406
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12047.7 | DNMT1-RFD | 99 | 230 | 1.70E-36 |
| PF12047.7 | DNMT1-RFD | 385 | 537 | 1.30E-33 |
| PF01426.17 | BAH | 732 | 863 | 2.50E-08 |
| PF01426.17 | BAH | 902 | 1040 | 1.70E-19 |
| PF00145.16 | DNA_methylase | 1172 | 1514 | 1.10E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00558 | DNMT1, dcm | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0090116 | Biological Process | C-5 methylation of cytosine |
| GO:0003886 | Molecular Function | DNA (cytosine-5-)-methyltransferase activity |
| GO:0003682 | Molecular Function | chromatin binding |
| GO:0008168 | Molecular Function | methyltransferase activity |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.000 |
| SRR2545915 | Juvenile tuber | 8.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.530 |
| SRR5643514 | five period of Gastrodia elata | 12.250 | |
| SRR5643515 | five period of Gastrodia elata | 10.940 | |
| SRR5643524 | five period of Gastrodia elata | 9.940 | |
| SRR5643525 | five period of Gastrodia elata | 6.750 | |
| SRR5643528 | five period of Gastrodia elata | 4.510 | |
| SRR5643658 | five period of Gastrodia elata | 4.980 | |
| SRR5643659 | five period of Gastrodia elata | 11.190 | |
| SRR5643660 | five period of Gastrodia elata | 12.610 | |
| SRR5643661 | five period of Gastrodia elata | 11.100 | |
| SRR5643662 | five period of Gastrodia elata | 9.010 | |
| SRR5643663 | five period of Gastrodia elata | 10.890 | |
| SRR5643664 | five period of Gastrodia elata | 9.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.37 |
| Juven | Juvenile tuber | 11.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.56 | |
| Mother_Juven | Mother tuber of Juvenile | 26.52 |