Detail information of GWHGAAEX018407/evm.TU.scaffold_94.17_evm.TU.scaffold_94.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|568303201|ref|YP_008975486.1|0ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase component [Phaeobacter gallaeciensis DSM 26640]
KOGKOG00570Mitochondrial Fe/S cluster exporter, ABC superfamily
nrgi|743843448|ref|XP_010938070.1|0PREDICTED: ABC transporter B family member 25, mitochondrial-like isoform X4 [Elaeis guineensis]
Swissprottr|Q9LVM1|AB25B_ARATH0ABC transporter B family member 25, mitochondrial (Precursor)
trEMBLtr|W1PB81|W1PB81_AMBTC0Uncharacterized protein {ECO:0000313|EMBL:ERN04280.1}
TAIRAT5G582700ABC transporter of the mitochondrion 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000092654199784618+
Transcript Sequence

Network for GWHGAAEX018407

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00664.22ABC_membrane1784661.80E-38
PF00005.26ABC_tran5296781.50E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05663ATM ABC transporters map02010

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0042626Molecular FunctionATPase activity, coupled to transmembrane movement of substances
GO:0016887Molecular FunctionATPase activity
GO:0005524Molecular FunctionATP binding
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.250
SRR2545915Juvenile tuber19.880
SRP108465SRR5643513five period of Gastrodia elata13.520
SRR5643514five period of Gastrodia elata19.590
SRR5643515five period of Gastrodia elata15.570
SRR5643524five period of Gastrodia elata19.720
SRR5643525five period of Gastrodia elata11.230
SRR5643528five period of Gastrodia elata13.260
SRR5643658five period of Gastrodia elata8.580
SRR5643659five period of Gastrodia elata7.960
SRR5643660five period of Gastrodia elata8.550
SRR5643661five period of Gastrodia elata8.400
SRR5643662five period of Gastrodia elata8.760
SRR5643663five period of Gastrodia elata8.560
SRR5643664five period of Gastrodia elata8.270
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.760
SRR6049655Rhizomagastrodiae_C368-T10_good_117.880
SRR6049656Rhizomagastrodiae_C368-T07_good_116.850
SRR6049657Rhizomagastrodiae_C368-T07_good_116.080
SRR6049658Rhizomagastrodiae_C368-T04_good_112.940
SRR6049659Rhizomagastrodiae_C368-T04_good_112.880
SRR6049660Rhizomagastrodiae_C368-T01_good_115.640
SRR6049661Rhizomagastrodiae_C368-T04_good_113.800
SRR6049662Rhizomagastrodiae_C368-T01_good_116.950
SRR6049663Rhizomagastrodiae_C368-T01_good_115.610
SRR6049664Rhizomagastrodiae_C368-T10_good_119.830
SRR6049665Rhizomagastrodiae_C368-T10_good_119.830
SRP279888GastroGastrodia elata tuber 8.51
JuvenJuvenile tuber10.97
Mother_GastroMother tuber of Gastrodia elata 6.45
Mother_JuvenMother tuber of Juvenile 8.02