Detail information of GWHGAAEX018411/evm.TU.scaffold_94.23


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG46387.00E-121Uncharacterized conserved protein
nrgi|695078987|ref|XP_009386897.1|0PREDICTED: RING finger and transmembrane domain-containing protein 2-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q6NPT7|HRD1B_ARATH1.00E-10ERAD-associated E3 ubiquitin-protein ligase HRD1B {ECO:0000305}
trEMBLtr|A0A067JDD7|A0A067JDD7_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP21837.1}
TAIRAT5G019607.00E-121RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000092971965988441-
Transcript Sequence

Network for GWHGAAEX018411

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_24024412.10E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.560
SRR2545915Juvenile tuber12.360
SRP108465SRR5643513five period of Gastrodia elata15.470
SRR5643514five period of Gastrodia elata16.140
SRR5643515five period of Gastrodia elata18.890
SRR5643524five period of Gastrodia elata17.700
SRR5643525five period of Gastrodia elata21.790
SRR5643528five period of Gastrodia elata22.720
SRR5643658five period of Gastrodia elata19.320
SRR5643659five period of Gastrodia elata13.370
SRR5643660five period of Gastrodia elata15.340
SRR5643661five period of Gastrodia elata14.960
SRR5643662five period of Gastrodia elata16.540
SRR5643663five period of Gastrodia elata15.190
SRR5643664five period of Gastrodia elata15.690
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.270
SRR6049655Rhizomagastrodiae_C368-T10_good_112.110
SRR6049656Rhizomagastrodiae_C368-T07_good_116.760
SRR6049657Rhizomagastrodiae_C368-T07_good_114.600
SRR6049658Rhizomagastrodiae_C368-T04_good_118.140
SRR6049659Rhizomagastrodiae_C368-T04_good_121.740
SRR6049660Rhizomagastrodiae_C368-T01_good_116.620
SRR6049661Rhizomagastrodiae_C368-T04_good_118.020
SRR6049662Rhizomagastrodiae_C368-T01_good_115.880
SRR6049663Rhizomagastrodiae_C368-T01_good_118.450
SRR6049664Rhizomagastrodiae_C368-T10_good_118.020
SRR6049665Rhizomagastrodiae_C368-T10_good_118.020
SRP279888GastroGastrodia elata tuber 14.37
JuvenJuvenile tuber16.57
Mother_GastroMother tuber of Gastrodia elata 32.42
Mother_JuvenMother tuber of Juvenile 39.75