Gene detail

Detail information of GWHGAAEX018414/CADD01456.1.gene

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2768	3.00E-08	Translation initiation factor 2, beta subunit (eIF-2beta)
nr	gi\|194696046\|gb\|ACF82107.1\|	1.72E-09	unknown [Zea mays]
Swissprot	tr\|O24473\|IF2B_WHEAT	5.00E-10	Eukaryotic translation initiation factor 2 subunit beta
trEMBL	tr\|B4FJ14\|B4FJ14_MAIZE	6.00E-10	Uncharacterized protein {ECO:0000313\|EMBL:ACF82107.1}
TAIR	AT5G20920	3.00E-08	eukaryotic translation initiation factor 2 beta subunit

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000092	1107820	1110424	+

Transcript Sequence
>GWHTAAEX018414 GTAAACACAAAATCTATTTTACATAATTAATTAATATATAATTAAATAGCATGTAAACTGATTTTAATTATTACGTAGTCCTAATAAATATGCACTTTTAATAACATGGGAAACATCAGGTTTGTATTTGCTTAAGTTGAGGCTGGATTAATGGATTAACTAAGCGAGATACTGTTTAGCTCTTAAGCTAGATATGCTTAAGCCTAAAACAAATAAACATCGTGTCTTTGTTACACAGACAGAGGACAGCAGCACCCCAACTTCTTCTCTTTATGTTAGTTAATTAGAGTTTTAGTACTTTGGTGAACTGGTAGTGAAACACCTAAAATGCTACCTATGATTTTTCATGATCTGTCTCTGCTTGTTTGGTTTGTTCTTGTTAGGTATGTTAAGAGCATGATTAATTGTCTGCTTTTCTAACTCCAAGATTTCTTATACAGCTCACTTGTTTGAAAATATATACCTATTTGTGAACTTATTTTTGATGCTCAGATGTTTATTGTTCATTGTTATAGCTTCTGGACCGGGTGTTCAACACCTTACGTGAGAATAATCCGCTTCTTGCTGGAGATAGGCGCAGAACTGTGATGAGGCCACCGCAAGTTCTTCGAGAGGGAACTAAAAAGACTGTTTTTGCAAACTTTATGGATTCCTGCAAGACGTATGTTGCACATTCAGTCATAATTCCTTGAAACTTTAGTTACCTTGAATGATTAATAGATGTGCATAATGCTTTACTATTACTGTTCAATACTTTGTTTCATCACTTTGAAATATTGTTCCTTTGTCAATGTTCATTTCTTCAGTTTATTGAGAAGGATCTCTCCAAATTTTTAAGTCAAAAGCATAAAAGAATTCGTACTGGTTGACTAATCATTTATTAAAGTATAAAAAATTTAATTTCAACTTTTTAGATATATAACATTTATGTAATAGAAATATTTTTGAGTTTAATAGAATTGTTTAATATTAAATATCATTTAATCACAACTCGAGACTCAAACTTGAAATTTTGCTATTGTGACAGGATGCATAGGCAGCCAGAACATGTCATGACTTTCTTGCTGGCTGAAATGGGAACTACCGGATCTCTTGATGGACAGCAGAGATTAGTTGTGAAGGGGAGATTTGCTCCTAAGAACTTTGAGGGTATTCTTAAGAGATATATCAGTAAGTTCCCACACACAAAACCTGACTTGAGTTCAACTTCAAAAAAGGCGGATTGGATTGACTTGCCGAACCTGAATCTGAATCGTTTCAATCTGTTTAGCAGACATTTAGAATCAAGATGGGCTGTAACGTGTATCTATTGCAAGGTAGGTAGGGAGAAGTAAGTTGGGTTCAGATTGAGAAATTGAACTGATTTTATAAACGGGTGGAGTTCAAGCCAAGCCATTTTATGATGACCAAACCTGACTCGTTAATTTGATTAGACACCCCCTGTGTGGCCCCCCCCCCCATCGAATCATAGATCTTACTTGCGATAATAATTTCTATACGATAATTTCAAGGTGCTCATGTATTTTGTTAAATTTCGGAACGGCACCCCCTTCATTCATTCAAGTACAGCAGCTAAAATACAGGTAGTTAATTTCTAATTAACCATCCAGTATTATTTCTTGACCACAAGTTCTTATTCTTATTTTCTAAGGGTAGTTTTTTCGAATTGAGTACAATTATTTTTTCATCGAAGGACAGTAATTTTCTTGGGAGCTAAACCAAATCTTAGTAACAGCAAAAAATTTAAGTGAAATTATAGTTTTTGCAAGGCTTTTCTGCATAGTAATTTCTTATCGTTGCTTGACAAACAAAATGTTTTTTTTTTTTTCTTCATTAGATGAGTATGTTATATGCAATGGCTGCAAGAGCGCTGATACCATTCTGTCGAAAGAGAATAGGTTATTCTTCCTACGTTGTGAACAGGTAACTGACTACTTATTATTCTTTGCTCTTACAGATTCTATTTTTGAACATTGTCGTTAATTAGAGTATTTTACCGATATGTTTTATCGAAATTCATGTTTAATATTGTTACTATTATTAGTGATAACAACAATAATAATAATAATATTGTTTGGGTTTTGGGTTCCAGTGCGGTTCATCACGCTCGGTTGCGCCAATAAAGGCAGGATTTGTGGCTCGTGTTGGACGCCGCAGAGCAGGAACTTAATATGGCTCGCTCATAAATCTGAGTAGGAGATAGGAAGCAGTGCTGTGCTCAAACCTTTGTGGCCCCTTCTGCTTCTGAAACGTCTTTTTTTTCTTCTGTTGTTTTTATATTATTAATTAAGCCTTCTTAGCAAGGCAGCGGCTGTTTGTTACATGAACTATATAGTCTGCGTTTGACCATCTGTTTAATGATTATTATGACGTTGATTATGCGCTTGTTAATGTATCTCATCCAGTGAGTTCGAGAGAGAGAGTGCTCTCTAGCAAGCGCTTGGTGCTTGCAAAACAAGTCTTCATTAAAAATATGATTATGCTTAGCACCAAACTTTGTTGGCCTTTCTGCTCAATAATACTCAGTGTGTTTCTTAAATAGTTTCTAAAACTGACTTTATTATTTTATTATTATATCAATTAATTTGGAGGTTTATGATGTCTA

Network for GWHGAAEX018414

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01873.16	eIF-5_eIF-2B	563	592	6.70E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03238	EIF2S2	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006413	Biological Process	translational initiation
GO:0003743	Molecular Function	translation initiation factor activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.290
SRP064423	SRR2545915	Juvenile tuber	12.130
SRP108465	SRR5643513	five period of Gastrodia elata	12.960
	SRR5643514	five period of Gastrodia elata	13.780
	SRR5643515	five period of Gastrodia elata	13.370
	SRR5643524	five period of Gastrodia elata	13.510
	SRR5643525	five period of Gastrodia elata	13.860
	SRR5643528	five period of Gastrodia elata	15.550
	SRR5643658	five period of Gastrodia elata	13.290
	SRR5643659	five period of Gastrodia elata	16.400
	SRR5643660	five period of Gastrodia elata	15.680
	SRR5643661	five period of Gastrodia elata	17.420
	SRR5643662	five period of Gastrodia elata	16.150
	SRR5643663	five period of Gastrodia elata	19.240
	SRR5643664	five period of Gastrodia elata	16.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.120
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.390
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.390
SRP279888	Gastro	Gastrodia elata tuber	11.02
	Juven	Juvenile tuber	8.06
	Mother_Gastro	Mother tuber of Gastrodia elata	6.45
	Mother_Juven	Mother tuber of Juvenile	8.06