Detail information of GWHGAAEX018415/evm.TU.scaffold_94.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|269839716|ref|YP_003324408.1| | 3.00E-60 | glycoside hydrolase family protein [Thermobaculum terrenum ATCC BAA-798] |
| nr | gi|743782591|ref|XP_010921181.1| | 0 | PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9LZV3|MAN6_ARATH | 0 | Mannan endo-1,4-beta-mannosidase 6 (Precursor) |
| trEMBL | tr|K4D1T4|K4D1T4_SOLLC | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc10g074920.1.1} |
| TAIR | AT5G01930 | 0 | Glycosyl hydrolase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000092 | 1117793 | 1126827 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018415
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00150.17 | Cellulase | 67 | 369 | 5.20E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH5 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K19355 | MAN | Metabolic pathways | map01100 |
| Fructose and mannose metabolism | map00051 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.170 |
| SRR5643514 | five period of Gastrodia elata | 0.730 | |
| SRR5643515 | five period of Gastrodia elata | 0.480 | |
| SRR5643524 | five period of Gastrodia elata | 0.760 | |
| SRR5643525 | five period of Gastrodia elata | 0.670 | |
| SRR5643528 | five period of Gastrodia elata | 0.640 | |
| SRR5643658 | five period of Gastrodia elata | 1.350 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |