Detail information of GWHGAAEX018418/evm.TU.scaffold_94.32
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1668 | 3.00E-90 | Elongation factor 1 beta/delta chain |
| nr | gi|747085489|ref|XP_011090208.1| | 2.37E-98 | PREDICTED: elongation factor 1-beta-like isoform X1 [Sesamum indicum] |
| Swissprot | tr|Q84WM9|EF1B1_ARATH | 8.00E-91 | Elongation factor 1-beta 1 |
| trEMBL | tr|V7B9I8|V7B9I8_PHAVU | 8.00E-98 | Uncharacterized protein {ECO:0000313|EMBL:ESW13533.1} |
| TAIR | AT5G12110 | 3.00E-90 | Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000092 | 1228523 | 1233082 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018418
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00736.18 | EF1_GNE | 141 | 228 | 1.90E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006414 | Biological Process | translational elongation |
| GO:0003746 | Molecular Function | translation elongation factor activity |
| GO:0005853 | Cellular Component | eukaryotic translation elongation factor 1 complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.060 |
| SRR2545915 | Juvenile tuber | 41.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 40.640 |
| SRR5643514 | five period of Gastrodia elata | 27.820 | |
| SRR5643515 | five period of Gastrodia elata | 37.280 | |
| SRR5643524 | five period of Gastrodia elata | 29.540 | |
| SRR5643525 | five period of Gastrodia elata | 30.680 | |
| SRR5643528 | five period of Gastrodia elata | 48.500 | |
| SRR5643658 | five period of Gastrodia elata | 23.230 | |
| SRR5643659 | five period of Gastrodia elata | 71.820 | |
| SRR5643660 | five period of Gastrodia elata | 77.440 | |
| SRR5643661 | five period of Gastrodia elata | 77.050 | |
| SRR5643662 | five period of Gastrodia elata | 73.840 | |
| SRR5643663 | five period of Gastrodia elata | 75.150 | |
| SRR5643664 | five period of Gastrodia elata | 47.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 39.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 57.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 51.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 54.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 43.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 70.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 70.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 66.53 |
| Juven | Juvenile tuber | 32.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 43.22 | |
| Mother_Juven | Mother tuber of Juvenile | 39.07 |