Gene detail

Detail information of GWHGAAEX018430/evm.TU.scaffold_94.48

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672130140\|ref\|XP_008788591.1\|	4.63E-144	PREDICTED: putative glucan endo-1,3-beta-glucosidase GVI [Phoenix dactylifera]
Swissprot	tr\|Q02439\|E13F_HORVU	1.00E-130	Putative glucan endo-1,3-beta-glucosidase GVI (Precursor; Fragment)
trEMBL	tr\|A2Y639\|A2Y639_ORYSI	3.00E-133	Putative uncharacterized protein {ECO:0000313\|EMBL:EAY98549.1}
TAIR	AT5G20340	9.00E-100	beta-1,3-glucanase 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000092	1815687	1818550	+

Transcript Sequence
>GWHTAAEX018430 AAAAAAAACACAATTCTACGAGCCTTAATTACTATCCCAAAAGCATGTTTATCCGATAATTTTTCTTATTAAAAAAGTAAATAATTACAGTTAGTCTTGGTAATGGCGAACCGGTGGGAGTGGCGGGAGCAGTTATAACTTAAGCAACGTTTTCGGATTCCCTCCTCTCTATAAATACAAGCAACGGGGCTACGAACGAGAACAGAAAAAACATATAGCGGCAGTTATGGAACGCGATCTTCTTCTCCGTCTTCCTCTTCTCTGCCTCGCTGCTCTGCCTCTCCTCTTCTCAGCCTTCGCCATTAATCCCGCAGGGAGCCAAGGCGTGGGCGTGAACTACGGCATGAAAGGGGACAATCTGCCGCCTCCGAAGGAAGTGATTTCGCTGTGCAAATCGAGAAACATCACGAAGCTCCGCCTGTTCAACCCCGACACCGCCGCCCTCTCCGCCCTCAGAAACTCCGGCGTCTCCGTCATCCTCGGCACCCTCAACGAGGACCTGCAGCGCCTCGCCGCCGATCCCGCCGCCGCCGATTCCTGGATTCGGACCAACGTCCTTCCGTACTCCGACGTCGAGTTTCGCTACATCGACGTAGGAAACGAGGTCGTTCCAGGTGAATCTGCGCCGAACGTTCTTCCCGCCATGCGCAATATGGCCGCCTCTTTGCGCGCCGCCGGCCTCAGTATTCCGGTCACCACCGCCGTTTCCACTGCGGTGCTCGCTACTTCTTATCCTCCTTCCCAAGGAGCCTTCTCCGAGAGTGCTTCCAAGGTGATGGGGCCAATCGTGTCATACCTGGCATCGAGCGGGTCACCTCTGCTGGTGAACGTGTACCCATACTTCGCGTATGCGGATAACCCGCAGGAGATCCGGCTGGACTACGCCCTCTTCGGCGCGGACGGGACGGTGGTGCAGGACGGGAATCTCGGATACGCGAACATGTTCGACGCGATGGTCGACTCGATGAGCTGCGCGATGGAGCGTGTCGGCGGGTCATCCGTCCGCGTTGTCGTCTCGGAAACTGGTTGGCCGTCCGCCGGCGGCGGTGTGGGGGCCACCGTTGATAACGCCCGGGCTTACAACGCCAATCTGGTGAAGCACGTGAGCCTCAAATCCGGCACGCCCAAGTTCCCCGAAAGGGAGATGGAGGTCTACTTGTTCGCCATGTTCAACGAGAACCTCAAGCCCCCGGGCACCGAGAGGAACTTCGGCATGCTCTACCCCGACATGACCGAGGTTTACCATCTCGATTTTTGATTCTTTTCCCCCTTCTTTATTTTCGTTCGTACATTGTGCTCTGCTACCTGCAGCTATTGTTTTCGTTTAGGGTTTTCGGATTGGGAAGGATTTCTTTATCTGTTGTTATCTTTGTTATGTATCACCAATACATTCATTGTAAATATTAAATCAATAGGTCTAAGTTTGTTATTTCGATCCAAAACGATATGATAACATTGTTCTTGATCCAGATTCTGTGGAGAGCACGAACACAGCATAGCTTAGACCCTCTAACATACTGTATTACAATAGGGGATCAAGTCATAGTATATTCCAATACTCAATTATGCAAGGGATGAACATTCACAATATTTATAAAATTGAATGGTGGATAAAACCCTGCCATTTTGATCCGATTATTAGAAAACTCGCAACCACTGTTCATCTTCCTTCCTGCACGACCCATATATTTGCATGAGCATAATAATCTATAACAGCTTGAAATGATCCAAACCTCAAGATCTATAGAGGAGGTTATTGCCATTGCTCCGGCCAATTCATGCCATTGATTTCACCAGGGTTGCTCTGTATAAATCCATAGTAGCTGAGAGACACATCTCTTTATCCATTCTTGAGCCCTCAATTATCCAGTGACTTCTAGGCACAACTCTGGTGTTCCTAGCTTGCTACTACCACTTATTGAGATCCTACAGTCTCATGAAGTCTCAATAAGGTGGAGAGGTGGAGGCGAGGGCGCGGCCGAGGGAGGAGGGGTTGCCGGCGGTGGGAGCAAGGGAAGAGGGGGGCTGTGGTGTGGAGAAAATAGGAATTGGGGGGGGGGG

Network for GWHGAAEX018430

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.17	Glyco_hydro_17	34	343	1.50E-116

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17
Carbohydrate-Active enzymes Family	GH17
Carbohydrate-Active enzymes Family	GH17
Carbohydrate-Active enzymes Family	GH17
Carbohydrate-Active enzymes Family	GH17

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.090
SRP064423	SRR2545915	Juvenile tuber	24.730
SRP108465	SRR5643513	five period of Gastrodia elata	33.780
	SRR5643514	five period of Gastrodia elata	33.640
	SRR5643515	five period of Gastrodia elata	41.940
	SRR5643524	five period of Gastrodia elata	39.800
	SRR5643525	five period of Gastrodia elata	92.340
	SRR5643528	five period of Gastrodia elata	83.910
	SRR5643658	five period of Gastrodia elata	116.150
	SRR5643659	five period of Gastrodia elata	8.860
	SRR5643660	five period of Gastrodia elata	7.800
	SRR5643661	five period of Gastrodia elata	10.820
	SRR5643662	five period of Gastrodia elata	10.350
	SRR5643663	five period of Gastrodia elata	7.870
	SRR5643664	five period of Gastrodia elata	13.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	49.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	87.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	56.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	42.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	48.940
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	80.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	80.230
SRP279888	Gastro	Gastrodia elata tuber	16.94
	Juven	Juvenile tuber	3.89
	Mother_Gastro	Mother tuber of Gastrodia elata	142.69
	Mother_Juven	Mother tuber of Juvenile	100.37