Detail information of GWHGAAEX018432/evm.TU.scaffold_94.52


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG27580Translation initiation factor 3, subunit e (eIF-3e)
nrgi|672172944|ref|XP_008806586.1|0PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Phoenix dactylifera]
trEMBLtr|M0TJH0|M0TJH0_MUSAM0Eukaryotic translation initiation factor 3 subunit E {ECO:0000256|HAMAP-Rule:MF_03004}
TAIRAT3G572900eukaryotic translation initiation factor 3E

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009219441361963528+
Transcript Sequence

Network for GWHGAAEX018432

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09440.9eIF3_N51371.70E-49
PF01399.26PCI2853993.60E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03250EIF3E, INT6 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0003743Molecular Functiontranslation initiation factor activity
GO:0005737Cellular Componentcytoplasm
GO:0005852Cellular Componenteukaryotic translation initiation factor 3 complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms62.370
SRR2545915Juvenile tuber67.690
SRP108465SRR5643513five period of Gastrodia elata57.160
SRR5643514five period of Gastrodia elata59.010
SRR5643515five period of Gastrodia elata57.640
SRR5643524five period of Gastrodia elata57.130
SRR5643525five period of Gastrodia elata44.400
SRR5643528five period of Gastrodia elata53.750
SRR5643658five period of Gastrodia elata43.620
SRR5643659five period of Gastrodia elata74.510
SRR5643660five period of Gastrodia elata76.590
SRR5643661five period of Gastrodia elata68.320
SRR5643662five period of Gastrodia elata60.230
SRR5643663five period of Gastrodia elata59.930
SRR5643664five period of Gastrodia elata59.920
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_163.850
SRR6049655Rhizomagastrodiae_C368-T10_good_175.050
SRR6049656Rhizomagastrodiae_C368-T07_good_168.220
SRR6049657Rhizomagastrodiae_C368-T07_good_160.350
SRR6049658Rhizomagastrodiae_C368-T04_good_160.470
SRR6049659Rhizomagastrodiae_C368-T04_good_155.630
SRR6049660Rhizomagastrodiae_C368-T01_good_158.490
SRR6049661Rhizomagastrodiae_C368-T04_good_161.850
SRR6049662Rhizomagastrodiae_C368-T01_good_174.100
SRR6049663Rhizomagastrodiae_C368-T01_good_162.760
SRR6049664Rhizomagastrodiae_C368-T10_good_179.060
SRR6049665Rhizomagastrodiae_C368-T10_good_179.060
SRP279888GastroGastrodia elata tuber 77.43
JuvenJuvenile tuber94.18
Mother_GastroMother tuber of Gastrodia elata 58.95
Mother_JuvenMother tuber of Juvenile 88.67