Detail information of GWHGAAEX018435/evm.TU.scaffold_94.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1871 | 2.00E-89 | Ubiquitin-specific protease |
| nr | gi|743845700|ref|XP_010938651.1| | 0 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9FPS3|UBP24_ARATH | 1.00E-158 | Ubiquitin carboxyl-terminal hydrolase 24 |
| trEMBL | tr|M0RYZ7|M0RYZ7_MUSAM | 0 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
| TAIR | AT4G30890 | 2.00E-89 | ubiquitin-specific protease 24 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000092 | 2057681 | 2068385 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018435
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00443.28 | UCH | 258 | 605 | 4.10E-47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11841 | USP10, UBP3 | Mitophagy - yeast | map04139 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016579 | Biological Process | protein deubiquitination |
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0036459 | Molecular Function | thiol-dependent ubiquitinyl hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 61.910 |
| SRR2545915 | Juvenile tuber | 52.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.560 |
| SRR5643514 | five period of Gastrodia elata | 41.280 | |
| SRR5643515 | five period of Gastrodia elata | 38.900 | |
| SRR5643524 | five period of Gastrodia elata | 42.770 | |
| SRR5643525 | five period of Gastrodia elata | 53.230 | |
| SRR5643528 | five period of Gastrodia elata | 54.310 | |
| SRR5643658 | five period of Gastrodia elata | 54.580 | |
| SRR5643659 | five period of Gastrodia elata | 33.430 | |
| SRR5643660 | five period of Gastrodia elata | 34.100 | |
| SRR5643661 | five period of Gastrodia elata | 29.040 | |
| SRR5643662 | five period of Gastrodia elata | 28.430 | |
| SRR5643663 | five period of Gastrodia elata | 30.280 | |
| SRR5643664 | five period of Gastrodia elata | 24.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 32.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 41.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 32.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.990 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.73 |
| Juven | Juvenile tuber | 24.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 30.96 | |
| Mother_Juven | Mother tuber of Juvenile | 29.25 |