Detail information of GWHGAAEX018440/evm.TU.scaffold_94.62
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428225819|ref|YP_007109916.1| | 0 | protoporphyrin IX magnesium-chelatase [Geitlerinema sp. PCC 7407] |
| nr | gi|743786634|ref|XP_010922222.1| | 0 | PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|O24133|CHLD_TOBAC | 0 | Magnesium-chelatase subunit ChlD, chloroplastic (Precursor) |
| trEMBL | tr|U5G3E4|U5G3E4_POPTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERP56854.1} |
| TAIR | AT1G08520 | 0 | ALBINA 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000092 | 2345826 | 2417397 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018440
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01078.20 | Mg_chelatase | 201 | 269 | 8.00E-09 |
| PF13519.5 | VWA_2 | 553 | 658 | 5.40E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03404 | chlD, bchD | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Porphyrin and chlorophyll metabolism | map00860 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015995 | Biological Process | chlorophyll biosynthetic process |
| GO:0016851 | Molecular Function | magnesium chelatase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.930 |
| SRR2545915 | Juvenile tuber | 19.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.690 |
| SRR5643514 | five period of Gastrodia elata | 32.620 | |
| SRR5643515 | five period of Gastrodia elata | 28.870 | |
| SRR5643524 | five period of Gastrodia elata | 33.430 | |
| SRR5643525 | five period of Gastrodia elata | 23.230 | |
| SRR5643528 | five period of Gastrodia elata | 19.590 | |
| SRR5643658 | five period of Gastrodia elata | 24.410 | |
| SRR5643659 | five period of Gastrodia elata | 21.300 | |
| SRR5643660 | five period of Gastrodia elata | 23.920 | |
| SRR5643661 | five period of Gastrodia elata | 19.210 | |
| SRR5643662 | five period of Gastrodia elata | 24.840 | |
| SRR5643663 | five period of Gastrodia elata | 28.860 | |
| SRR5643664 | five period of Gastrodia elata | 25.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.510 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.56 |
| Juven | Juvenile tuber | 22.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.54 | |
| Mother_Juven | Mother tuber of Juvenile | 24.04 |