Gene detail

Detail information of GWHGAAEX018441/evm.TU.scaffold_94.63

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2673	1.00E-74	Uncharacterized conserved protein, contains PSP domain
nr	gi\|695027988\|ref\|XP_009401355.1\|	1.42E-152	PREDICTED: zinc finger CCHC domain-containing protein 8-like [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0T141\|M0T141_MUSAM	2.00E-148	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P23660_001}
TAIR	AT5G38600	1.00E-74	Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000092	2481508	2570560	-

Transcript Sequence
>GWHTAAEX018441 AAAAAAAAAAAAAACATCAGCGGTTCGGCGACTTCATCGCGATTTACTCACCCTGGCGTAATCAGCCGCAGGATCGGTATTTTTGGACACAAGCCTTCAGGGTTTTTTTTGATCTTTTACCGAAGTCAATTTGCAGCTCTCGTTGAAATCGCAACTAGCACTGCAATCTGCAGGCTAATCGGAGCGTTGCTGCTGCGTCGAAAACGGAGACCACGAGCTGCGTCGCTTTTTTTGCTGCTTTGTTGCGTTGGAGGCGGAGCCACGGTTTTTTTGCTCTTATTATCTAAATGGGGTCAGACGATTTTTTCAACCTTGAATCATCTTGCCACTCTGACAGTCAAGTTGAGAATGACTATCATGACTCACAGGCTAAAGAAATTAGTTCATCTACTTCTAAAGGAAAGGTGGATGATGCTATCCTTATTGGGACTCAAGAATTTTCTTATGGCAGCAATATTGATGAATGTAATGAAAATGTTGGAGTGGAAGACAGTGAACATGTTATTAACATGGATCTTGAAGATGATTTTATACCTAGGCCTCCAGCTCTACAAGAAAACATTCAGCGAAATGATTCTGTTATCCTTTTGGAAAGTATGGATGGAACTAAATCTAAGTTTTCTTCTAATATTATTTCCGCAAATTCAGTCAGCAAGATCTCAACAACTAAGCTGGGGGTTGATGAAAGTCCTATTACTGGTTTTAAAAGAGCACGGACAACTTCCAATAATCAGCAACCGTTTGTACGTGTTGTTTATAACTGTTTGACAAGAGAAAGCAAAAAAAAACTTATGGAACTTATGCAGCAGTGGTCCCAATGGCAGAAGGAGCATCAATCACCCTCAATTGTGCCAGAAGATGTTACCCTGGAATCTGGAGAAGATACGTATTTTGCAGCATTGCATATTGGCTCAGAGATGACTAATGCAGTGCCATATTGGCTTGATAACCAAGCTATAAAGGAGAATATTGGCGATCCTGTGAATTTGGATGGTGCTATGGTGCCTTTGTATGACCGTGGATTTTCATTGGGCTTAAATACACCTGACGGTTCTTCTAATCCTGAAAGTGTGCTGCAGTCATCAGAAGCTTCTCGCTGCTTCAATTGTGGTTCATACAGTCATGGAGTCAAAGAGTGCCCAAAGCCACGTGATAATGTTGCCATCAGTAATGCTCGCAAACAGCACAGTTCAAAGAGGAACCAAAATACTGCTTCTCGGAGTCAAAGCAGATATTACCAGAAATCTTCAGGAAAATTTGATGATTTAAAAGCTGGAGTCCTGGGGTCTGAAACTAGAGAATTATTGGGTATTAGGGAACTTGATCCACCGCCATGGCTGCATCGTATGCGGCAATTGGGGTACCCACCTGGATATCTCGAAAATGCGGAAGAAGATGAGCCTTCCGGAATCACAATATTTGCCAACGAGGAAGAGGACACAGAATGCGAGGACGGAGAGCTTCCGGAGAGGGCGGAACCCGCGCCGTCGAAGAAAAGGATGACCGTGAAATTCCCAGGGATTAATGCGCCCATCCCTGATAATGCAGATAACTGGATTTGGGGTGCTCCGCCCTCGAGCCGCCCATCAAGCTCGCGGCAAGGTAGCTGTGTCGATCAGACTATTGACCCTGCAGATCGCTGGGACGGGCTTTCCCGGCCCAGCTACTCTCCAAGCTCTCAGGACACTAATTTTACTTCGACTCCAAGCCCTCGTTTGGGAAGGTCCCTTTCAGACAGGGGAGGCTGGCAGAGCCCAGTATCCTATGAGAACTCCCCCCCATTGCACAGCCCTCACACCCCCTATCCTTACTCCGGCATCACCCGAATGTCTCCTCAATTTCACAACAGCCCTGCAGCCGCCGTGGACCATCGGAGCCATGAAAGGGAAAAGGATTATCACCACCGCCATCATCATCATCATTATCAGCATAGATGGTGAGACTGATACTTGGAATCTGCTTGTGTACTCTTATTTTGTATTAGTAATCTGTATTGTGGAATGCAGTCTCACTTCGATTTGAACTTCACCCAAATCTTCTGTATTTACTTGTTTAACTGCTGTATCTAGCATGTCTTGCAATTTTTTTTTTATTTCTTTTTTATTAAATAGCAATCACTTCCTATGTTGTGTAAAGTCATTATCACTAGTTTTTTGTGAAGTTGTTAGAGACTTTTACATACATAAGACAAACTCCTTTGTTTTCATTTATCACTTTTAAAATATTGCCAATC

Network for GWHGAAEX018441

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04046.15	PSP	328	365	2.70E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.350
SRP064423	SRR2545915	Juvenile tuber	44.200
SRP108465	SRR5643513	five period of Gastrodia elata	35.900
	SRR5643514	five period of Gastrodia elata	34.850
	SRR5643515	five period of Gastrodia elata	31.040
	SRR5643524	five period of Gastrodia elata	32.360
	SRR5643525	five period of Gastrodia elata	30.330
	SRR5643528	five period of Gastrodia elata	26.330
	SRR5643658	five period of Gastrodia elata	32.800
	SRR5643659	five period of Gastrodia elata	28.640
	SRR5643660	five period of Gastrodia elata	32.280
	SRR5643661	five period of Gastrodia elata	31.270
	SRR5643662	five period of Gastrodia elata	29.290
	SRR5643663	five period of Gastrodia elata	30.230
	SRR5643664	five period of Gastrodia elata	32.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.240
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.740
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.000
SRP279888	Gastro	Gastrodia elata tuber	28.21
	Juven	Juvenile tuber	50.96
	Mother_Gastro	Mother tuber of Gastrodia elata	38.34
	Mother_Juven	Mother tuber of Juvenile	49.52