Detail information of GWHGAAEX018444/evm.TU.scaffold_94.68
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|187736087|ref|YP_001878199.1| | 6.00E-25 | amino acid/peptide transporter [Akkermansia muciniphila ATCC BAA-835] |
| KOG | KOG1237 | 4.00E-175 | H+/oligopeptide symporter |
| nr | gi|743846466|ref|XP_010938844.1| | 0 | PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Elaeis guineensis] |
| Swissprot | tr|Q9SX20|PTR18_ARATH | 1.00E-175 | Protein NRT1/ PTR FAMILY 3.1 |
| trEMBL | tr|M0TSH5|M0TSH5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P21720_001} |
| TAIR | AT1G68570 | 4.00E-175 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000092 | 2640885 | 2649718 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018444
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00854.20 | PTR2 | 85 | 495 | 4.90E-82 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.420 |
| SRR2545915 | Juvenile tuber | 1.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.080 |
| SRR5643514 | five period of Gastrodia elata | 3.360 | |
| SRR5643515 | five period of Gastrodia elata | 5.280 | |
| SRR5643524 | five period of Gastrodia elata | 2.080 | |
| SRR5643525 | five period of Gastrodia elata | 2.120 | |
| SRR5643528 | five period of Gastrodia elata | 1.260 | |
| SRR5643658 | five period of Gastrodia elata | 0.820 | |
| SRR5643659 | five period of Gastrodia elata | 2.250 | |
| SRR5643660 | five period of Gastrodia elata | 2.970 | |
| SRR5643661 | five period of Gastrodia elata | 2.610 | |
| SRR5643662 | five period of Gastrodia elata | 3.370 | |
| SRR5643663 | five period of Gastrodia elata | 2.700 | |
| SRR5643664 | five period of Gastrodia elata | 5.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 34.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.550 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 48.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 48.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.40 |
| Juven | Juvenile tuber | 2.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.96 | |
| Mother_Juven | Mother tuber of Juvenile | 3.56 |