Detail information of GWHGAAEX018448/evm.TU.scaffold_94.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-124 | FOG: PPR repeat |
| nr | gi|672169842|ref|XP_008804966.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9LUJ4|PP248_ARATH | 5.00E-125 | Pentatricopeptide repeat-containing protein At3g22670, mitochondrial (Precursor) |
| trEMBL | tr|M0RZ57|M0RZ57_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P11990_001} |
| TAIR | AT3G22670 | 2.00E-124 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000092 | 2731784 | 2734827 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018448
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 145 | 173 | 0.034 |
| PF13041.5 | PPR_2 | 211 | 259 | 2.00E-08 |
| PF13812.5 | PPR_3 | 270 | 329 | 1.90E-14 |
| PF13041.5 | PPR_2 | 346 | 395 | 1.90E-14 |
| PF01535.19 | PPR | 456 | 485 | 0.0077 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.410 |
| SRR2545915 | Juvenile tuber | 1.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.710 |
| SRR5643514 | five period of Gastrodia elata | 2.290 | |
| SRR5643515 | five period of Gastrodia elata | 1.480 | |
| SRR5643524 | five period of Gastrodia elata | 1.860 | |
| SRR5643525 | five period of Gastrodia elata | 0.470 | |
| SRR5643528 | five period of Gastrodia elata | 0.350 | |
| SRR5643658 | five period of Gastrodia elata | 0.490 | |
| SRR5643659 | five period of Gastrodia elata | 1.830 | |
| SRR5643660 | five period of Gastrodia elata | 1.520 | |
| SRR5643661 | five period of Gastrodia elata | 1.960 | |
| SRR5643662 | five period of Gastrodia elata | 1.280 | |
| SRR5643663 | five period of Gastrodia elata | 1.610 | |
| SRR5643664 | five period of Gastrodia elata | 1.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.620 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.18 |
| Juven | Juvenile tuber | 1.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.55 | |
| Mother_Juven | Mother tuber of Juvenile | 0.58 |