Gene detail

Detail information of GWHGAAEX018449/evm.TU.scaffold_94.77

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|124028419\|ref\|YP_001013739.1\|	DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM 5456]
KOG	KOG0215	RNA polymerase III, second largest subunit
nr	gi\|695076837\|ref\|XP_009385728.1\|	PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q42877\|RPB2_SOLLC	DNA-directed RNA polymerase II subunit RPB2
trEMBL	tr\|M0U5V6\|M0U5V6_MUSAM	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU000431}
TAIR	AT5G45140	nuclear RNA polymerase C2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000092	2786570	2896028	+

Transcript Sequence
>GWHTAAEX018449 GGCTGAGTCGCTTCCTTTGTACCCTTTAAACCCTTGTCAACTTCTATTGTGGCGTTGTTGGGCAGTTCTACTCTCCCTCGCACAATCCTTCTTCGTCATCGACGAAACCTTACCTTAGACGTGGAGCAAAGAATGAGCTATCTTGGGAATGACTCTGTTGAAACTCAAAACAAGCTCGCCAAGCCAATCAAATCTGCCGTCGACAAGTACGCTCTCCTTCCAGAATTTCTAAAGGTGCGGGGTCTAGTTAAGCAGCACATCGGCTCATTCAACTACTTTACTAACCATGATATTAAGAAGATAATGAAGGCAAATGATCGCATCGTGTGTCCTCAAGACCAAGGGCTTTATCTCCGGTATACTAAAATTTACATTGGGAGGCCCGAGGAGTATGCAGAGCATGCTGCCGAAGAACTCACTCCCCATATCTGCCGTTTGTCTGACCGCACATATGCTGCTCCTATAAAGGTAGATATAGAATATACCCGGCCAAATCAAACAAATAAGGAATATAAGAAAGATCTTGTTATTGGACGCATGCCAATTATGTTACAAAGCACCAGTTGCGTGTTAAGTGGAAAGGATGAAGCTGAACTAGCCAAACTTGGTGAGTGTCCTCTTGATCCTGGCGGATACTTCATTATTAAAGGAAACGAGAAGGTGATTTTGATACAAGAGCAACTTTCCAAAAATCGCATAATTATTGATATTGATAGTAAGGGCAGGGTCAATGCATCTGTTACAAGCAGCACTCATATTACAAAAACTAAGACTGTCTTTTTCATGGATAAAGATAAAATATATCTGCAACTCAATCAGTTCTCTAAGCCGGTTCCAATTATGGTGATCATGAAAGCAATGGGTATGGAGAATGATCAAGAGGTTGTGCAAATGCTTGGAAGAGATCCAAAGTATGGCTCTCTTCTTTTCCCATCAATGCAGGAGTGCAAGTCTGAGAAAATATATACTAAAAAACAAGCCTCAGATTACCTTTTGGGAAAGTTGGCAAATTTTAGTTTACCAAGACCTGGAATAGACAAGGATGACCGTGTGAAGAAAATTCTTATCAATGTGTTTCTTGCACATGTTCCTGTAAAAGATGAGAATTTTAGGCCAAAATGCATATATACTGCTGTTATGCTGAGGAGGATGATGGATGCTGTACTTAACGTTGACACTTTTGATGATAAGGATTATGTTGGAAACAAAAGATTAGAACTCTCGGGACAGCTTGTAGCCTTACTTTTTGAGGACTTGTTTAAAACTATGAATTCTCAAGTTGCTAGCCGCATGGAACAAGCGTATGATAAAGCCAGTCGTTCTAGCCCATTAGATTTTATACATTACATGAGGAGCGACACTATTACTAACGGCTTAGAAAGAGCCATATCTACTGGAAATTGGGATTTGAAACGATTTAAAATGAATCGAAAAGGTGTATCTCAGGTTCTTTCAAGATTGGCTTTCATTGCAACATTGGGCTACATGACACGTGTCTCACCACAATTTGAGAAAACAAGAAAAGTTAGTGGTCCAAGGGCCTTGCAGCCTAGTCAGTGGGGCATGCTTTGCCCATGCGACACACCCGAAGGAGAAGGTTGTGGATTGACCAAAAATCTAGCATTGATGACTCACGTTACAACAGATGAAGAGGAGGGTCCTCTAATTGAATGGTGTTATAGTCTTGGTGTTGAAGACGTTGAGCGACTATCTGGTGAAGAGCTTCATGCACCAGATTCATTTTTGGTTATGCTTAATGGACTCATAGTTGGTAAACATACGCAACCACAGAAATTTGTTAATGCTATGCGAAAGCTACGCAGGAAGAATATTATTGGAGAATTTGTGAGCATTTTTGTACATGAACGACAGCGATGTGTGTATGTTGCCTCTGATGGTGGCCGAGTTTGTCGTCCACTTGTAATTGCTGACAAGGGAGTCTCAAGGATCAAAGAATATCACATGAAAGAATTGAGGGATGGAATACGCAGCTTTGATGATTTTGTACGAGAAGGCTTGATTGAGTATCTTGATGTTAATGAAGAGAACAATGCCTTGATTGCTCTTTACGAACATGGAATTAACAAGGATGGTGATAATGAAGATAATGCTGATGTTCAGAAGAGTGCCATAACACATTTTGAGATAGAGCCATTTACAATTTTGGGAGTGGTCGCTGGATTAATTCCTTATCCCCATCACAACCAGTCTCCTCGCAACACATACCAGTGCGCTATGGGAAAGCAGGCAATGGGAAATATTGCTTATAATCAGCTATGTCGAGCTGATACTCTACTTTATCTACTTGTATATCCTCAGCGCCCTCTGCTGACAACAAGAACTATAGAGCTGATTGGATATGATAAGCTTGGTGCTGGGCAGAACGCAACCGTTGCTGTTATGAGTTATAGTGGCTATGATATTGAGGATGCTATTGTTATGAACAAGTCTTCCCTTGATCGTGGGTTTGGACGCTGCATTGCATTGAAGAAGCAAACTGTTGTAAAGGAGATCTATGGTAATGAAACGTCCGATAGAATTGTTAGACCACAAAATGAACCAAGGAAGCAGGCACTTGATGCTGATGGAATTGCTGCTCCTGGTCAAATAGTGCGTAAGCATGATGTCCTTGTAAATAAGCAGAGCCCGAGAAATAAAAGGGACAAAATCAGTAATCCAATGGGGTTAAAAGACAATGATTATGTCCCATCAAACGTTAGTTACAAAGGCCCAGAAGGCGAGACAACCGTTGTTGATCGTGTGATGATGTACTCAGATAAGGATAACAGGATGTGTATAAAGTTTATCATTCGCCATGTCCGCAGACCAGAGTTAGGGGACAAATTCAGCAGCAGGCATGGACAAAAGGGTGTTGTAGGTACCATTGTCCAGCAGGAGGATTTTCCATTTTCAGAGAGAGGTGTATGCCCTGATTTGATCATGAATCCACATGGATTTCCTAGTCGAATGACTATTGGGAAGATGATTGAGCTCCTGGGCGGTAAAGCTGGAGTTTTAAGTGGTAGGTTTCACTATGGCAGTGCCTTTGGGGAACCTAGCGGCCACGCTGATAAAGTTGAAGACATCAGTCGCACCCTTGTGGAGCATGGATTTAACTATAGTGGGAAAGATCTACTCTACTCAGGAATTTCTGGAAATCCCCTTCAAGCTTATATATTTATGGGACCTATATACTACCAGAAATTGAAACATATGGTCCTCGATAAGATGCATGCTCGGGCTTCTGGGCCTCGCATGACATTGACCAGACAGCCAACTGAAGGAAGGGCGCGTGATGGAGGCTTGCGTTTGGGAGAGATGGAACGCGATTGTTTAATTGCATATGGCGCAAGCATGCTGATCTATGAGCGGTTGATGCTATCGAGCGACCCCTATCAAGTTCAGGTTTGCAGGAAGTGTGGGTTGTTAGGCTACTATAACCATAAGCTGAAAACATCTTGGTGTTCAATGTGCAAAAATGGGGATAATATGTCCAGCATGAAACTGCCATATGCTTGCAAGCTTCTATTTCAGGAATTGCAATCAATGAATGTTGTTCCTCGTTTGAAGCTAACAGAAGCCTGAATGGTGAAATCATTAATATTGTGTTGACACTCATCAATTGCCGCATCAATTGCCACATACGTAAAAGATATAAATTATGGTGTTGACACAAGAAATTTGGGATCCATACTAAAGAGTCGGATGTTCGTGAGGAAACAAAGTGCAAGTAAAAGTCTTCAAGAGTAGAAAAGGAGAAAAAAAAGTTTGCAAGACCAGAACCAAAAATCTGCCTACCTTCGATGGTATTATAGATGTCCATGGAGAAATACTTCGACTTTGGAGGAGCCTCAAATAAAAGATTTTGACATTGTCAGTGCTTGATGTCGAAATTGTAATGGTTTTGGTGTAATGAAAGAAAAAACCTCTTTTCATTATGATAAAAATCATTAATGACATAATATAATGGCATGGCAATGTCTCTTGAAGAGAACTGATGCTGCAGGCAATCTATCTTTTGCTATTTTTTAAAATAGATTAAATATATCTTCAACATTACTTGGGCATTTTTTTCTTTAATGCAAATTAGATCAATTTTTATGGTACGAAAAATAAAC

Network for GWHGAAEX018449

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04563.14	RNA_pol_Rpb2_1	37	412	1.40E-47
PF04561.13	RNA_pol_Rpb2_2	186	362	5.80E-18
PF04565.15	RNA_pol_Rpb2_3	438	502	3.40E-19
PF04566.12	RNA_pol_Rpb2_4	539	598	4.90E-22
PF04567.16	RNA_pol_Rpb2_5	621	674	1.50E-14
PF00562.27	RNA_pol_Rpb2_6	681	1054	3.00E-123
PF04560.19	RNA_pol_Rpb2_7	1056	1146	1.30E-32

Protein Sequence

>GWHPAAEX018449
MSYLGNDSVETQNKLAKPIKSAVDKYALLPEFLKVRGLVKQHIGSFNYFTNHDIKKIMKANDRIVCPQDQGLYLRYTKIYIGRPEEYAEHAAEELTPHICRLSDRTYAAPIKVDIEYTRPNQTNKEYKKDLVIGRMPIMLQSTSCVLSGKDEAELAKLGECPLDPGGYFIIKGNEKVILIQEQLSKNRIIIDIDSKGRVNASVTSSTHITKTKTVFFMDKDKIYLQLNQFSKPVPIMVIMKAMGMENDQEVVQMLGRDPKYGSLLFPSMQECKSEKIYTKKQASDYLLGKLANFSLPRPGIDKDDRVKKILINVFLAHVPVKDENFRPKCIYTAVMLRRMMDAVLNVDTFDDKDYVGNKRLELSGQLVALLFEDLFKTMNSQVASRMEQAYDKASRSSPLDFIHYMRSDTITNGLERAISTGNWDLKRFKMNRKGVSQVLSRLAFIATLGYMTRVSPQFEKTRKVSGPRALQPSQWGMLCPCDTPEGEGCGLTKNLALMTHVTTDEEEGPLIEWCYSLGVEDVERLSGEELHAPDSFLVMLNGLIVGKHTQPQKFVNAMRKLRRKNIIGEFVSIFVHERQRCVYVASDGGRVCRPLVIADKGVSRIKEYHMKELRDGIRSFDDFVREGLIEYLDVNEENNALIALYEHGINKDGDNEDNADVQKSAITHFEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRADTLLYLLVYPQRPLLTTRTIELIGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIALKKQTVVKEIYGNETSDRIVRPQNEPRKQALDADGIAAPGQIVRKHDVLVNKQSPRNKRDKISNPMGLKDNDYVPSNVSYKGPEGETTVVDRVMMYSDKDNRMCIKFIIRHVRRPELGDKFSSRHGQKGVVGTIVQQEDFPFSERGVCPDLIMNPHGFPSRMTIGKMIELLGGKAGVLSGRFHYGSAFGEPSGHADKVEDISRTLVEHGFNYSGKDLLYSGISGNPLQAYIFMGPIYYQKLKHMVLDKMHARASGPRMTLTRQPTEGRARDGGLRLGEMERDCLIAYGASMLIYERLMLSSDPYQVQVCRKCGLLGYYNHKLKTSWCSMCKNGDNMSSMKLPYACKLLFQELQSMNVVPRLKLTEA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03021	RPC2, POLR3B	RNA polymerase	map03020
K03021	RPC2, POLR3B	Cytosolic DNA-sensing pathway	map04623

Gene Ontology

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003899	Molecular Function	DNA-directed RNA polymerase activity
GO:0003677	Molecular Function	DNA binding
GO:0032549	Molecular Function	ribonucleoside binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	40.910
SRP064423	SRR2545915	Juvenile tuber	40.140
SRP108465	SRR5643513	five period of Gastrodia elata	13.140
	SRR5643514	five period of Gastrodia elata	13.810
	SRR5643515	five period of Gastrodia elata	12.200
	SRR5643524	five period of Gastrodia elata	12.330
	SRR5643525	five period of Gastrodia elata	10.190
	SRR5643528	five period of Gastrodia elata	6.640
	SRR5643658	five period of Gastrodia elata	9.650
	SRR5643659	five period of Gastrodia elata	16.870
	SRR5643660	five period of Gastrodia elata	16.940
	SRR5643661	five period of Gastrodia elata	14.350
	SRR5643662	five period of Gastrodia elata	15.460
	SRR5643663	five period of Gastrodia elata	15.730
	SRR5643664	five period of Gastrodia elata	16.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.300
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.870
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.980
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.790
SRP279888	Gastro	Gastrodia elata tuber	16.99
	Juven	Juvenile tuber	23.87
	Mother_Gastro	Mother tuber of Gastrodia elata	10.03
	Mother_Juven	Mother tuber of Juvenile	15.09