Gene detail

Detail information of GWHGAAEX018459/evm.TU.scaffold_94.94

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434394192\|ref\|YP_007129139.1\|	6.00E-11	WD-40 repeat-containing protein [Gloeocapsa sp. PCC 7428]
KOG	KOG0307	0	Vesicle coat complex COPII, subunit SEC31
nr	gi\|743845285\|ref\|XP_010938544.1\|	0	PREDICTED: protein transport protein SEC31 homolog B-like [Elaeis guineensis]
Swissprot	tr\|Q8L611\|SC31B_ARATH	0	Protein transport protein SEC31 homolog B {ECO:0000305}
trEMBL	tr\|M0TSL8\|M0TSL8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P22150_001}
TAIR	AT3G63460	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000092	3657923	3704504	-

Transcript Sequence
>GWHTAAEX018459 ATTCCCATTGCTCAGTTAGGGAACTCTCTGATCTTTTTCTCCTGCGACAGCTCGTACTTCGGCTTAGTTTTTTCTAATTTTTAAAGCGCAAAATCCCCGAAACCGGGGATCCTACAGCACCTTCTCACCGATCTTGCCCCAAGACTAACCTCCGTAGATTTTTCGACCCAATCCGGCGAGATCCCCGATCTTCCCTATGGCTTCCATCAAGAGCGCCCCTCGATCGGCTCTTGCCGCCTTCGCCCCCGATGCCCCTTATCTCGCCGCTGGAACGGTGGCCGGCGCCGTCGATCTATCGTTTAGTTCGTCTGCCAACCTTGAGATCTTTAAGCTCGATTTCCAATCTGACAGCCAAGACCTCCCTGTCGTGGGTGCTTGCCCTAGTAGCGACCGGTTTAATCGACTCTCATGGGGGAAACCGACCTCCGGCCATGGAGAGTTTTCTCTGGGCCTCATTGCCGGAGGCCTTGGAGATGGCACAATTAACGTCTGGAATCCAGCCAAGCTAATTGGTTCGGAAGGGAGTGATGACGCTTTTGTTGCACGACTTGAGAAGCACTCTGGGCCGGTTCGGGGGTTAGAATTCAATCCTCATGAACCAAAGCTGCTTGCTTCTGGGGCAGATGAAGGTGAATTATGTATATGGGATTTAGAGATTCCATCAGAACCAAAGCTTTTTCCATCTTTGAAGAGTGTTGGTTCGGGTTCCCAAACAGAAATATCTTTTGTGTCCTGGAATGTGAAGTTTCAACCTATATTGGCCTCAACTTCTTACAATGGGATAACTGTTGTCTGGGATTTGAGGCAACAGAAGCCATTGACAAGTTTTTCAGATTCCACTAGAAGAAGGTGCTCTGTTTTGCAATGGAATCCTGAAGTTTCTACACAACTTATTGTTGCATCTGATGATGATAGCTCTCCATCTCTCAGAGTTTGGGATGTTAGGAAGACAATATCACCAGTAAGAGAGTTTGTAGGGCATACAAAAGGGGTGATTGCTATGTCATGGTGTCCATATGAGAGCTCATTATTACTGACATGTGCCAAAGACAATCGTACTATCTGTTGGGACACTAATACAGGGGAGATGCAATGTGAGTTGCCAGCTAGCACCAATTGGAATTTTGACATTCATTGGTACTCAAAGATTCCAGGTGTCATATCGGCATCTTCTTTTGATGTAAAGCTTGGAATATATAATATTGAGGCTTGCAACAAGTTGGCTCTTAGTGATGGCAATTATGTTGCTCCAGTTCGGTTGAGAGCTCCAAAGTGGTTGAAACGTCAGGCTGGAGTGTCTTTTGGTTTTGGAGGCAAGCTTGTGACATTTTATCCTGGTCAAGCAGCTCCTGGTGCCTCACCATGCGTTTCTGAGGTTCATATACAAAATTTGGTTACTGAAGATAGTTTGGTGCACCGCTCAACTGAATTTGAATCTTCAATACAAAGTGGTGAAAGGGACTCTCTGCGGGTTTTATGTGAAAAAAAATCCAAGGATTCCTTGTCTGAAGATGAAAGGGAAGTATGGTCTTTCATGAAGGTGATGTTTGAGGAAGATGGGACAGCTAGGACAAAGTTGCTCACCCATCTTGGTTTCAGAGTTCCTAATGTTGAATCAGAGATTATATCTAACCAGCTAGCCAAGGAGTTGATTAGCACTGTTAATTTTGATGAGAAGATGAAGAGTGGAACACACTCTCATGGAGATGATACTTCTTTCTCCATTGACAATGGTGAGGAGTTTTTCAATAATCTTCAACCTTCAAATGATAAGGATGCACTAGAAGAAAAAGAATTTTATGATGAGAAGCAAGCACCCAAAGAAACAGAAGTGACCTCTGATGTTTCTGACCCATCAATTGATGAGGCTATCCAACGTGCCTTGGTAGTGGGAGATTACAAGGAAGCAGTTCGCCTTTGCATGTCAGCAAACAGATTAGCTGATGCATTAGTTATTGCTCATGTTGGTGGTCCTTCTTTGTGGGAGGTTACACGGGATAAGTATCTTCAAAATAGTCTCTCACCCTATTTAAAGATTGTTGCTGCAATGGCTGCTAATGATCTGATGGCACTTGTCAATACTAGGCCACTTAATTCGTGGAAAGAAACACTAGCCCTATTGTGCACGTTTGCACAGAAGGAGGAATGGACTATTCTCTGTGATACTCTTGGCTCTCGACTGTTAACTGTGGGAAATACCCTTGCTGCTACTCTCTGTTATGTATGTGCTGGAAATATTGATAAAATAGTGGAAATTTGGTCTCGTAGTCTAATTTATGGGCAGGAGGGGAGGAGTTATGTTGATCTGCTGCAGGATTTAATGGAAAGAACCATTGTTCTTGCCCTTGCGTCTGGACAAAAAAGGCTTAGCAAATCTTTATCAAAGTTGGTAGAGAACTATGCTGAACTTTTAGCTAGTCAAGGGCTCCTCTCAACTGCAATGGAGTATCTAAAACTCCTGGGTTCAGAAGATTCTTCGCTTGAGCTTGCCATTCTTCAAGATCGTATTAAGCTTTGCATTGAAGAGAGCCAAGTGCCTACAAGCTCACCTTTTGAGGAAAACCTGCATCAATCTGATCCTTTGCATAGTATTGGTGGATCTACATCTGGAATAGCAAATGGTTCGCAATATTACTACCAGGATAACATACAACTCCAGCAGCAGCAGCCTACTTCTACCACTCAATATGTTGATGGATTTCAGCAGAATTTGAGTTCATATGGAGGATACCAACCTGCACAAGTTGCACAACCTTACCATGGTTACAATAATCCTGCTCAATTCCAACCTGCTCCAACACCTCAAATGTTCATCCCATCACAAACTCACCAAGTTTCACAGCAAAGTTTTGGGCAACCTTTTACCCCTGCTCAGCCTCCTTTGAGGCCATTTGTTCCTGCAAACCCACCTGCCCTTCGAAATGCTGAACAATATCAGCAGCCACCATCTCTGGGCTCGCAATTGTATCCGGGAGTTACAAGTCAGAGTTATCAACATGGCCCTTCGGTACCTGCTTCTCCTATCGTTGCACTGCAGCCAGGTTCTGTTGCTGGCCATAGGCTTCCTCAGCCCGGGGCATCCCCAGCCCCCAGGGGATTCATGCCAGTTAGTAGTTCCAGTTTTGGCCACACCACCAGCCTCAGTCCTGTTCAACCCTCTAGTCCAACGCAACAAGTGCAACAACCAGTGGCGCCTCCAGCCCCTCCACCTACAGTTCAAACGGTTGATACTTCAAAAGTTCCTGCTGAGCTGAGGCAAGTCATCGGGACATTAACTAGGCTTTTTCATGAGACCTCAGAAGCTCTGGGTGGGTCTCGCTCAAACCCGGCCAAGAAAAGGGAGATTGATGACAATTCGAGGAAAATAGGGGCCCTTTTCGCAAAGCTAAATAGCGGGGATATATCTTCAAACGCCTCTTCCAAGCTCCGCCAACTCTGCCAAGCCCTGGATGTCGGTGACTTTGCCACCGCTTTGCATGTCCAGGTACTGTTGACAACAAGCGACTGGGATGAATGCAACTTCTGGCTCGCAGCACTGAAGCGAATGATCAAAGCAAGGCAGACTGTTAGAATGTGACAAGTCCGGTGGAAGGGTATCCTTCTGCAATTTCTTCAAGAAATCCAGCTTTAATTTTATATATTCAATTTTTTTTTTTTGTGTATTAGCCCATTATGTTTAGGCCAGACCAGACCGTCATAAAGCATTCAGCCTTATGCTGTATCAATAGAGTTGCAGGTTCTTTGTCTCCACCCAAAAAATAAAAGAAAAAAAAAAATATAATCCTTTGTGTTCTTATTTATCATCTTTGAAGATGTTGCTTAGGCTTGCTTCCGGGAGAGTTTAAGTTTCGACAGTGATTTTTGTTGTTTTAGCTATAACGTCACAGCAAGCAAATTGCAAGCTACTAAAATAGTTATTATCATTTTTTATTTCATAAGAATTGTTATTTATTTATTATTATTGTTGCTTCAATAGCAAAGTGCCTGAGCTGAGATGATTTTTTTTAAATTTGAATTATTTTTAATATTTAGATTTACCAATTCATGAGGAATAAATTTTGGGGATTGGGGTGGC

Network for GWHGAAEX018459

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	118	151	0.25
PF12931.6	Sec16_C	559	697	7.60E-10

Protein Sequence

>GWHPAAEX018459
MASIKSAPRSALAAFAPDAPYLAAGTVAGAVDLSFSSSANLEIFKLDFQSDSQDLPVVGACPSSDRFNRLSWGKPTSGHGEFSLGLIAGGLGDGTINVWNPAKLIGSEGSDDAFVARLEKHSGPVRGLEFNPHEPKLLASGADEGELCIWDLEIPSEPKLFPSLKSVGSGSQTEISFVSWNVKFQPILASTSYNGITVVWDLRQQKPLTSFSDSTRRRCSVLQWNPEVSTQLIVASDDDSSPSLRVWDVRKTISPVREFVGHTKGVIAMSWCPYESSLLLTCAKDNRTICWDTNTGEMQCELPASTNWNFDIHWYSKIPGVISASSFDVKLGIYNIEACNKLALSDGNYVAPVRLRAPKWLKRQAGVSFGFGGKLVTFYPGQAAPGASPCVSEVHIQNLVTEDSLVHRSTEFESSIQSGERDSLRVLCEKKSKDSLSEDEREVWSFMKVMFEEDGTARTKLLTHLGFRVPNVESEIISNQLAKELISTVNFDEKMKSGTHSHGDDTSFSIDNGEEFFNNLQPSNDKDALEEKEFYDEKQAPKETEVTSDVSDPSIDEAIQRALVVGDYKEAVRLCMSANRLADALVIAHVGGPSLWEVTRDKYLQNSLSPYLKIVAAMAANDLMALVNTRPLNSWKETLALLCTFAQKEEWTILCDTLGSRLLTVGNTLAATLCYVCAGNIDKIVEIWSRSLIYGQEGRSYVDLLQDLMERTIVLALASGQKRLSKSLSKLVENYAELLASQGLLSTAMEYLKLLGSEDSSLELAILQDRIKLCIEESQVPTSSPFEENLHQSDPLHSIGGSTSGIANGSQYYYQDNIQLQQQQPTSTTQYVDGFQQNLSSYGGYQPAQVAQPYHGYNNPAQFQPAPTPQMFIPSQTHQVSQQSFGQPFTPAQPPLRPFVPANPPALRNAEQYQQPPSLGSQLYPGVTSQSYQHGPSVPASPIVALQPGSVAGHRLPQPGASPAPRGFMPVSSSSFGHTTSLSPVQPSSPTQQVQQPVAPPAPPPTVQTVDTSKVPAELRQVIGTLTRLFHETSEALGGSRSNPAKKREIDDNSRKIGALFAKLNSGDISSNASSKLRQLCQALDVGDFATALHVQVLLTTSDWDECNFWLAALKRMIKARQTVRM

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14005	SEC31	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	67.900
SRP064423	SRR2545915	Juvenile tuber	56.730
SRP108465	SRR5643513	five period of Gastrodia elata	39.470
	SRR5643514	five period of Gastrodia elata	41.550
	SRR5643515	five period of Gastrodia elata	40.360
	SRR5643524	five period of Gastrodia elata	39.680
	SRR5643525	five period of Gastrodia elata	47.600
	SRR5643528	five period of Gastrodia elata	58.780
	SRR5643658	five period of Gastrodia elata	51.400
	SRR5643659	five period of Gastrodia elata	49.910
	SRR5643660	five period of Gastrodia elata	55.160
	SRR5643661	five period of Gastrodia elata	48.910
	SRR5643662	five period of Gastrodia elata	53.790
	SRR5643663	five period of Gastrodia elata	53.230
	SRR5643664	five period of Gastrodia elata	55.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	55.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	45.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	47.810
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	49.980
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	47.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	51.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	48.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	48.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	48.340
SRP279888	Gastro	Gastrodia elata tuber	54.64
	Juven	Juvenile tuber	66.60
	Mother_Gastro	Mother tuber of Gastrodia elata	48.80
	Mother_Juven	Mother tuber of Juvenile	68.73