Detail information of GWHGAAEX018461/evm.TU.scaffold_94.97
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|300311428|ref|YP_003775520.1| | 1.00E-63 | S-adenosylmethionine:2-demethylmenaquinone methyltransferase [Herbaspirillum seropedicae SmR1] |
| nr | gi|694996775|ref|XP_009395952.1| | 7.49E-87 | PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FH13|RRAA3_ARATH | 5.00E-78 | Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 |
| trEMBL | tr|M0RYE6|M0RYE6_MUSAM | 3.00E-87 | 4-hydroxy-4-methyl-2-oxoglutarate aldolase {ECO:0000256|RuleBase:RU004338} |
| TAIR | AT5G56260 | 2.00E-77 | Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000092 | 3803929 | 3804737 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018461
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03737.14 | RraA-like | 6 | 158 | 6.30E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0051252 | Biological Process | regulation of RNA metabolic process |
| GO:0008428 | Molecular Function | ribonuclease inhibitor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.220 |
| SRR2545915 | Juvenile tuber | 6.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.360 |
| SRR5643514 | five period of Gastrodia elata | 7.180 | |
| SRR5643515 | five period of Gastrodia elata | 8.110 | |
| SRR5643524 | five period of Gastrodia elata | 9.030 | |
| SRR5643525 | five period of Gastrodia elata | 2.530 | |
| SRR5643528 | five period of Gastrodia elata | 3.750 | |
| SRR5643658 | five period of Gastrodia elata | 2.190 | |
| SRR5643659 | five period of Gastrodia elata | 2.040 | |
| SRR5643660 | five period of Gastrodia elata | 2.440 | |
| SRR5643661 | five period of Gastrodia elata | 2.700 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.79 |
| Juven | Juvenile tuber | 15.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.02 | |
| Mother_Juven | Mother tuber of Juvenile | 24.02 |