Detail information of GWHGAAEX018462/evm.TU.scaffold_94.98
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|338174110|ref|YP_004650920.1| | 1.00E-90 | hypothetical protein PUV_01160 [Parachlamydia acanthamoebae UV-7] |
| nr | gi|672115327|ref|XP_008780468.1| | 7.11E-168 | PREDICTED: probable arabinose 5-phosphate isomerase [Phoenix dactylifera] |
| Swissprot | tr|Q9M1T1|SETH3_ARATH | 1.00E-149 | Probable arabinose 5-phosphate isomerase |
| trEMBL | tr|C5XVD1|C5XVD1_SORBI | 1.00E-166 | Putative uncharacterized protein Sb04g004050 {ECO:0000313|EMBL:EES04547.1} |
| TAIR | AT3G54690 | 5.00E-149 | Sugar isomerase (SIS) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000092 | 3815109 | 3816639 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018462
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01380.21 | SIS | 47 | 175 | 3.10E-21 |
| PF00571.27 | CBS | 206 | 264 | 2.60E-05 |
| PF00571.27 | CBS | 275 | 330 | 4.10E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06041 | kdsD, kpsF | Metabolic pathways | map01100 |
| Lipopolysaccharide biosynthesis | map00540 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:1901135 | Biological Process | carbohydrate derivative metabolic process |
| GO:0097367 | Molecular Function | carbohydrate derivative binding |
| GO:0016853 | Molecular Function | isomerase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.820 |
| SRR2545915 | Juvenile tuber | 5.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.690 |
| SRR5643514 | five period of Gastrodia elata | 17.110 | |
| SRR5643515 | five period of Gastrodia elata | 16.060 | |
| SRR5643524 | five period of Gastrodia elata | 14.510 | |
| SRR5643525 | five period of Gastrodia elata | 7.350 | |
| SRR5643528 | five period of Gastrodia elata | 10.040 | |
| SRR5643658 | five period of Gastrodia elata | 7.770 | |
| SRR5643659 | five period of Gastrodia elata | 16.670 | |
| SRR5643660 | five period of Gastrodia elata | 9.050 | |
| SRR5643661 | five period of Gastrodia elata | 12.910 | |
| SRR5643662 | five period of Gastrodia elata | 9.950 | |
| SRR5643663 | five period of Gastrodia elata | 12.290 | |
| SRR5643664 | five period of Gastrodia elata | 5.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.780 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.410 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 33.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 33.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.90 |
| Juven | Juvenile tuber | 5.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.32 | |
| Mother_Juven | Mother tuber of Juvenile | 3.85 |