Detail information of GWHGAAEX018463/evm.TU.scaffold_94.101
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|557694902|ref|YP_008797956.1| | 6.00E-26 | ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum] |
| KOG | KOG0417 | 2.00E-95 | Ubiquitin-protein ligase |
| nr | gi|743766081|ref|XP_010913269.1| | 1.90E-103 | PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa-like [Elaeis guineensis] |
| Swissprot | tr|Q94F47|UBC28_ARATH | 1.00E-96 | Ubiquitin-conjugating enzyme E2 28 |
| trEMBL | tr|K3ZXT2|K3ZXT2_SETIT | 9.00E-104 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si031414m} |
| TAIR | AT4G27960 | 2.00E-95 | ubiquitin conjugating enzyme 9 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000092 | 3845721 | 3880549 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018463
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00179.25 | UQ_con | 5 | 141 | 1.60E-54 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06689 | UBE2D, UBC4, UBC5 | Protein processing in endoplasmic reticulum | map04141 |
| Ubiquitin mediated proteolysis | map04120 | ||
| MAPK signaling pathway - fly | map04013 | ||
| Toll and Imd signaling pathway | map04624 |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 285.430 |
| SRR2545915 | Juvenile tuber | 306.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 223.880 |
| SRR5643514 | five period of Gastrodia elata | 272.980 | |
| SRR5643515 | five period of Gastrodia elata | 237.770 | |
| SRR5643524 | five period of Gastrodia elata | 271.060 | |
| SRR5643525 | five period of Gastrodia elata | 385.270 | |
| SRR5643528 | five period of Gastrodia elata | 338.710 | |
| SRR5643658 | five period of Gastrodia elata | 354.590 | |
| SRR5643659 | five period of Gastrodia elata | 168.570 | |
| SRR5643660 | five period of Gastrodia elata | 176.730 | |
| SRR5643661 | five period of Gastrodia elata | 185.450 | |
| SRR5643662 | five period of Gastrodia elata | 180.290 | |
| SRR5643663 | five period of Gastrodia elata | 181.200 | |
| SRR5643664 | five period of Gastrodia elata | 177.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 215.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 303.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 236.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 206.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 293.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 312.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 233.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 268.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 213.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 240.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 265.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 265.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 306.98 |
| Juven | Juvenile tuber | 174.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 315.68 | |
| Mother_Juven | Mother tuber of Juvenile | 197.77 |