Detail information of GWHGAAEX018464/evm.TU.scaffold_94.103


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262194905|ref|YP_003266114.1|8.00E-24actin/actin family protein [Haliangium ochraceum DSM 14365]
KOGKOG06760Actin and related proteins
nrgi|743810485|ref|XP_010928911.1|0PREDICTED: actin-related protein 8 [Elaeis guineensis]
Swissprottr|Q7XR80|ARP8_ORYSJ0Actin-related protein 8
trEMBLtr|M0S1A3|M0S1A3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P19450_001}
TAIRAT5G561800actin-related protein 8

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009238980103999700+
Transcript Sequence

Network for GWHGAAEX018464

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.32F-box39825.30E-05
PF00022.18Actin1782981.10E-11
PF00022.18Actin2994604.20E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms24.530
SRR2545915Juvenile tuber16.620
SRP108465SRR5643513five period of Gastrodia elata9.710
SRR5643514five period of Gastrodia elata10.230
SRR5643515five period of Gastrodia elata8.980
SRR5643524five period of Gastrodia elata11.320
SRR5643525five period of Gastrodia elata16.060
SRR5643528five period of Gastrodia elata15.440
SRR5643658five period of Gastrodia elata17.330
SRR5643659five period of Gastrodia elata8.350
SRR5643660five period of Gastrodia elata10.110
SRR5643661five period of Gastrodia elata9.500
SRR5643662five period of Gastrodia elata9.410
SRR5643663five period of Gastrodia elata11.310
SRR5643664five period of Gastrodia elata12.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.200
SRR6049655Rhizomagastrodiae_C368-T10_good_110.800
SRR6049656Rhizomagastrodiae_C368-T07_good_111.590
SRR6049657Rhizomagastrodiae_C368-T07_good_112.690
SRR6049658Rhizomagastrodiae_C368-T04_good_114.030
SRR6049659Rhizomagastrodiae_C368-T04_good_117.580
SRR6049660Rhizomagastrodiae_C368-T01_good_112.270
SRR6049661Rhizomagastrodiae_C368-T04_good_112.930
SRR6049662Rhizomagastrodiae_C368-T01_good_19.390
SRR6049663Rhizomagastrodiae_C368-T01_good_112.460
SRR6049664Rhizomagastrodiae_C368-T10_good_19.260
SRR6049665Rhizomagastrodiae_C368-T10_good_19.260
SRP279888GastroGastrodia elata tuber 10.53
JuvenJuvenile tuber11.41
Mother_GastroMother tuber of Gastrodia elata 17.11
Mother_JuvenMother tuber of Juvenile 16.13