Gene detail

Detail information of GWHGAAEX018466/evm.TU.scaffold_94.106

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672122543\|ref\|XP_008784606.1\|	0	PREDICTED: scarecrow-like protein 9 [Phoenix dactylifera]
Swissprot	tr\|O80933\|SCL9_ARATH	3.00E-175	Scarecrow-like protein 9
trEMBL	tr\|F6HLC1\|F6HLC1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55585.1}
TAIR	AT2G37650	9.00E-175	GRAS family transcription factor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000092	4079123	4083129	-

Transcript Sequence
>GWHTAAEX018466 GTGGAACTTCTTTATTGCATTACATATTTTAATTTATTGTTTATGGCAGGCAGAGTGGAAACAGAGAAGAAGGCGGCTGCCGGCGGGTAACGCGAGGAACGAGTGTAGGTTTTTCTACTGCTTTTCATGGAGGTCCGTGCATTTTGATCTTTATTTCTGAGTGCAAACTCACGACTTTGCTCCACTTTGATTCGTCTCTTTTCCTTCCTCTCTAATTTTCAGTTTATTTTGGCTTGATTTGCGTCAGATCTTGTTTCAACCTTTTTCTTTTTGAATTTTTAGTTTTTATTTTTTGTACTAGGTTTTGATTGAACTTTGTTTTAAGATTCATCCGTTTCTGTTGATTTTTGAGTCTAGGGTTTTAGAAATTTGTCATAGCGATCCAAGCGTTAAGATTTTCAATGGTTATGGATCGGGGGATGAAAGGCCTTTATGAAGTGGATGGATTGAGCTATGAGAATTTCTTCTCTTATCAGAATCGAATGGAAGCCGGTGGAGGCTTCAAGCTGAACTTCTCTTTGCCCTCTTTCGAGAATGCTTCCGATATGCGCAGCCCGAAACTTGACGCATCTGAGTTTTTCCTGGCTAATAATAGCTTCCATACCAGCAAATTTGTTAGTTCTCAGTCATACAAGAATTCCCCTGAATCTGTTTCTGCGCCATATGGAAACTCTATTTCCACTTCGAGCAGTAGCCATGAGGCGGATTCAGCTGATGATTCAGAGGTTTTCTCTGACATTGTTCTGAGCTACATAAATAAGATGCTTATGGAGGAGGATATGGATGAGAATATGCATTTCTTGTATCAGGAGAAAGCTGCGCTTCGAGCTACAGAGAAACCGTTTTACGATATCCTTGGCCAGAACTACCCACCGCCATCTCCAGATCAGCCTCCATTTATTCAGAATCATTACTTGGAGAATCCAGATGAGCGTAACAACGTAGTGTCAGAGTTTTTTTCTGATGAAAGTAAGTTGATTACTGATCTTATTGTTGAAAATTGTGCCCCAACTTTGCTCAATGAGCAGGAAGATTGGCCCATCTCTGGGGTGGCTGCTGAGCCTGATGTAAGGAGAGTGCAATCGGTTTCAGCTGTTGAGTATCGGGGACGGAAGACACATCAAATTGATGATTTGGATTTGCAGGAAGGAAGAAAAATCAAGCTTTCCGCTGTGTCCTCTGACGACGTTGTTCGATTCGATAAGCTTGACTCTATTTTGCTTTGCAAGAAAGAAGAGAAGAAATTCTTCCAAAAAGATCCAATCAAAGGTTCTAATAATGGCGGTAAAGGTCGAGGAAAGGGCCAACAGAATAAGGCTGTGGTCGATCTGAGAACCCTTCTCATACGTTGTGCCGAGGCGGTGGCTGCTGATGACCGCCGCAATGCGAATGAGCTATTGAAGCAGATCAGACAGCATTCTTCTCCATTTGGTGATCCGACTCAGAGGGTGGCTTACTGCTTTGCAGACGGGCTTGAGGCCCGAATGGCTAGCACGGGGAGCCAAATTTATCGCTCATTAGTTGTAAAGCAAGTGATGGTTTCTGATATCTTGAAGGCCTACCAGTGTTTTCTAACCGCCTGCCCGTACAAGAAGATATCATATACATTCTCTAACCAGACAATAATGGATGTATCAGAGAAGGCATCAAGATTGCACATTATAGATTTTGGCATTGATTTTGGCTTCCAGTGGCCTTGCCTCATTCAGCGTCTGTCATCCCGACCTGGGGGACCGCCAAAGCTTCGAATAACCGGTATTGATGTACCTCAGCCAGGCTTCCGTCCGGCTGAGCGCGTTGAGGGGACTGGTAAAAGGCTGGCTGATTATGCCATGACTTTCAATGTTCCATTTGAATACAATTCTATTGCAATTAAATGGGAGACCATTCGGGTCGAAGATTTGAATATCGATACTGACGAGGTGGTTATTGTGAATTGTATGTACCGCTTCAAGAGTCTCGCCGATGAGACCGTCATTGCTGACTGCCCTAGAACTAAGGTCTTGAGTTTGATTCGGGAAATCAACCCTGATGTGTTTATTCATGGGATTGTCAATGGCTTGTATAGTGTGCCTTTTTTCGTCACCCGATTCAGGGAAGCTCTATTCCACTTCTCTTCTTTGTTTGATATGCTTGATACGACATTGCCGCGCGAGGATGCGCAAAGAATGTTGATTGAGAGGAATCTATTTGGTCGTGAGGCTCTGAATGTCATAGCTTGCGAGGGTTTGGAAAGAGTGGAGAGACCCGAAACTTACAAGCAGTGGCAGGTGAGGAACTTGAGAGCTGGCTTTACACAGCTCCCTCTCAATCCTCTTATTACGAAGAAAATAACGAACATGGTGAGTGACAACTATCATGGGGAATTCCTCGTCGACAAAGATAGACAGTGGCTGCTACAGGGCTGGAAAGGGCGTGTCATCTATGCAATTTCAACATGGAAGCCTTATGAAAAGTGTTAGGATTTGACAAAATCAGTCTGGATGATTGATGTGAAAAGATTTTGTAGTATGTTGGTTATGTTGCAACGCTCTAATGGTTAAATGCTTATGGAAATATGGTGGTGTACACGCCTAGAAGTTAAGCTATTGTATGGCTTTAAGGCTAAGATGAACGATCTTCTTCTCTTAAATTGGATGCGTGTTGAGCCTTGCTGACAAAAGAACGTGTATTTTTTTTTTGCATGTATTTTAATCAATATGATGACTAATGGAAGGAGCAGTGTTTGCATTTCTTTTACTATTGTCTGTGGTGAGGCGTCAATTTTGACTTGAAGATAAGCATCTCAGAGAAGTTTAGTTGTAACATAAACTGAAATCTTTAATATTTTCAAAAAAGTTTTGTTGGCCGGTTCTCTATAATTAATTTTGACTCTTATCTTTCTTTTAATTGGTTCAAGCTCGTTTCCCCTTGACCCATGCACCCCTTGTTATCAGTACCTTTTCAGTTAAAGTTGTCAACAACGTCATATTTGTGACCTGGTTCTCCGTTAATGAGCTTTATAGTTTTACTGACGTGTTACTTTTTATTCTTATAATATTAATCATAAAGGAACGACGAGCCTATGATTGAATTCTCAAGCTATTATGTGTAGCTCGACTGTGAGCTTGGGGCAATTAGCTTTAAGTGGCTTCGATCTTCTGATCACGACCCCCCTTTTCCTCAAGTTTCAGCTCACTTCGATGTGTCAGTGAGAGTTGAGGAGTTTAGTAGTTAGCTTAGTAGTGCTTTAAATTATCAATGGCTACTTGTAAGTCACTCGGACTTTATGGTAAATAGACAATACAAACTTTGAAAGGTATAAATTTTATTTAACCATAATTAGATTCGCTGAAAGC

Network for GWHGAAEX018466

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03514.13	GRAS	310	681	2.40E-114

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	52.210
SRP064423	SRR2545915	Juvenile tuber	88.000
SRP108465	SRR5643513	five period of Gastrodia elata	76.450
	SRR5643514	five period of Gastrodia elata	60.410
	SRR5643515	five period of Gastrodia elata	75.560
	SRR5643524	five period of Gastrodia elata	69.620
	SRR5643525	five period of Gastrodia elata	51.590
	SRR5643528	five period of Gastrodia elata	42.450
	SRR5643658	five period of Gastrodia elata	48.000
	SRR5643659	five period of Gastrodia elata	76.720
	SRR5643660	five period of Gastrodia elata	78.070
	SRR5643661	five period of Gastrodia elata	69.000
	SRR5643662	five period of Gastrodia elata	70.020
	SRR5643663	five period of Gastrodia elata	70.300
	SRR5643664	five period of Gastrodia elata	72.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	78.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	67.050
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	75.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	69.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	82.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	69.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	66.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	66.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	63.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	63.840
SRP279888	Gastro	Gastrodia elata tuber	71.76
	Juven	Juvenile tuber	92.23
	Mother_Gastro	Mother tuber of Gastrodia elata	82.26
	Mother_Juven	Mother tuber of Juvenile	92.70