Detail information of GWHGAAEX018469/evm.TU.scaffold_95.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|70606569|ref|YP_255439.1| | 1.00E-21 | SAV protein-like [Sulfolobus acidocaldarius DSM 639] |
| KOG | KOG2475 | 0 | CDC45 (cell division cycle 45)-like protein |
| nr | gi|743789419|ref|XP_010922899.1| | 0 | PREDICTED: cell division control protein 45 homolog [Elaeis guineensis] |
| Swissprot | tr|Q9M0Y8|NSF_ARATH | 0 | Vesicle-fusing ATPase |
| trEMBL | tr|A5B0Z8|A5B0Z8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN78533.1} |
| TAIR | AT3G25100 | 0 | cell division cycle 45 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 18343 | 48054 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018469
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00004.28 | AAA | 258 | 314 | 5.70E-11 |
| PF00004.28 | AAA | 430 | 545 | 1.30E-07 |
| PF02724.13 | CDC45 | 710 | 1266 | 3.30E-146 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06628 | CDC45 | Cell cycle | map04110 |
| Cell cycle - yeast | map04111 | ||
| Meiosis - yeast | map04113 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006270 | Biological Process | DNA replication initiation |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.460 |
| SRR2545915 | Juvenile tuber | 6.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.320 |
| SRR5643514 | five period of Gastrodia elata | 6.040 | |
| SRR5643515 | five period of Gastrodia elata | 6.160 | |
| SRR5643524 | five period of Gastrodia elata | 5.710 | |
| SRR5643525 | five period of Gastrodia elata | 5.690 | |
| SRR5643528 | five period of Gastrodia elata | 4.250 | |
| SRR5643658 | five period of Gastrodia elata | 5.230 | |
| SRR5643659 | five period of Gastrodia elata | 6.850 | |
| SRR5643660 | five period of Gastrodia elata | 5.370 | |
| SRR5643661 | five period of Gastrodia elata | 7.910 | |
| SRR5643662 | five period of Gastrodia elata | 4.500 | |
| SRR5643663 | five period of Gastrodia elata | 5.990 | |
| SRR5643664 | five period of Gastrodia elata | 5.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.210 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.06 |
| Juven | Juvenile tuber | 9.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.00 | |
| Mother_Juven | Mother tuber of Juvenile | 6.04 |