Gene detail

Detail information of GWHGAAEX018470/evm.TU.scaffold_95.4

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|70606569\|ref\|YP_255439.1\|	4.00E-61	SAV protein-like [Sulfolobus acidocaldarius DSM 639]
KOG	KOG0741	0	AAA+-type ATPase
nr	gi\|743756258\|ref\|XP_010915886.1\|	0	PREDICTED: vesicle-fusing ATPase-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9M0Y8\|NSF_ARATH	0	Vesicle-fusing ATPase
trEMBL	tr\|A0A067JN78\|A0A067JN78_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP20974.1}
TAIR	AT4G04910	0	AAA-type ATPase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	64080	101467	-

Transcript Sequence
>GWHTAAEX018470 CAATTGTGTGTTTGAGCCCTAATAACATATCGAGTCGCATTTTCTTAAAAAACACGGATACGTTTTCTTTAAAAAGTCTTCATACGAGATTTTATTGAATTCTCCCTGCCGCCCTATCATTTCCCTCGATCGACCAACTGGATCCAGGCCGCTCGCCAATGTCTGGCCGCTCGCTGGCGTCGGTGGTGGAGATGATAGTTATCAACACACCAAATCAGGATCTCGTGAAGACAAACTTCGCCTATTGCTCTGCTGGCGATTTCCGGAGGTTTTCAATCCCCGGAACCAACCCAACTCAAGTTCTAGTTGGGGACTCTGTTGTTCTTCCTCTGCAGAGCCATAACAGCATTTTTGATCTTCATATTGGTCTGAACGCTATCCAACGTAGGCACATCAAAATCTCAGCTGGCGATAAAATATCAGTTGTTAGGTTTTTGCCTCCGGGTGATTTTTCTCTTGCGCTGCTTAGTGTCGAGCTGAACTATGTTAAAGCAAAATCTAATATAAATGAAGAGTTAGATGCCATTGTTCTTGCACAGCACCTTCGCAGGATTTTTCATAGTCAGATTATGACTTCTGGACAAAGAGTTTTATTTGAATTTTTGGGTATCAATTATGTTTTAACTGTTAATCGGGCTATGGTAGAGGAACTGGAAAATTCAAATGATGTTGAAAGAGGACAAATAACCAATGACACACATATAATTTTTGATGCAGTTTCAAACTCAGGGATAAAGATTATTAATCAGAATGAAGCTGCAAGCAGCAATATTTTCAAGCAAAAAAAGTTTAATCTCCAGGAACTTGGAATAGGAGGACTTAATGAAGGATTTGTTCACATCTTTAGAAGGGCATTTGCTTCTCGTGTTTTCCCTCCGCATGTTATGAACAAATTGGGCATCAAGCATGTGAAAGGCATGCTGCTTTATGGCCCTCCAGGTACCGGAAAAACTCTTTTGGCCCGACAGATCGGAAAGTTGCTTAATGGAAGGGAACCAAAGGTTGTTAATGGACCTGAAGTATTGAGCAAATTTGTCGGAGAGACAGAGAAGAACGTAAGGGATTTATTTGCTGATGCTGAACAGGACCAAAGGGCACGAGGTAATCAAAGTGACTTGCACATCATCATATTTGATGAAATTGATGCTATTTGTAAGACTAGAGGGTCAATGCGGGATGGCACTGGTGTTCATGATGGCATTGTGAACCAACTACTAACAAAGATTGATGGGGTTGAGTCCTTAGACAATGTTCTTCTCATTGGAATGACCAATAGGAAAGATTTATTGGACGAAGCATTATTACGGCCTGGGCGATTGGAGGTCCATGTTGAAATTAACCTTCCTGATGAAAATGGTCGTCTTCAAATTTTGCAAATTCACACAAATAAACTGAAAGAAAACTCTTTCTTAGCTCCAGATGTAAACCTTCTAGAGCTTGCTGCACGGACAAAGAATTTTAGTGGAGCTGAGCTAGAAGGTCTTGTGAAAAGTGCTGTTTCATTTGCCCTAAATCGGCAATTGAATATGGACGATCTTACCAAACCATTAGATGAAGAGAGCATAAGAGTTACCATGAATGACTTTTTGACTGGTCTTTCAGAAATTTTCCCCGCATTTGGTGCATCCATAGATGAACTTCAACGGTGCAGGCTTTATGGTATAATAGAATGTGGTGAAAGGCATAAACACATCTATGAAGACATCATGAGTCGGGTAGAGCATGTTAAAACAAGAAAGGGAAATCCCCTTTTAACTTGTCTTTTAGAAGGTTCTGTGGGAAGTGGTAAAACAGCAATGGCAGCAACCATTGGTATTGATAGCAATTTGCCATATGTCAAAATTGTCTCGGAAGAGTCAATGGTTGGTTTAAATGAAAGCAGCAAATGTGCAAAATTGAGCAAGGTTTTTGAAGATGCTTATAAGTCCGAGATGAGCATCATTATTCTTGATGACATTGAAAGCCTGCTGGAATATGGTGCCATTGGTTCTCGCTATTCAAGTTTGGTTTTACGAACATTGAAGATCTTTCTAAGAAAACTTCCTCCGAAGGGAAAGAATATGCTTGTCATTGGAACTACAAGTGAGGCAGAATTTCTCGACACTCTTGGAATTTGTGCTCCTTTTTCTAAAATTTATCATGTGCCGACATTGACCAAGGAGAATGCCAGAGAGGTGTTGCAACGTCTTGATGTATTTTCAGTAGATGATATTGATGCAGCTGCTGAAGCTTTTCATGGGAAGCCGTTGAGGGAACTGTTTTCACAGGTGGAATTGGCTGCCGAGAGAGCTACTGGAAAAAATTTAAATGACCTTTCAGGAGATGATGAGAAGATAGATATAAATTACTTGTATAGTGTCATGGGCTAAATATGATGCGTAGATTTTATTTTATTTTATTTTTCATCTTTTATTTTTTTTATTTGAATGCTTCAATTTTTGAATGGGTTCCAAGGGAGTGGGTTCTTACAATATATACAAACACACTAGGACAGGGCAAATTCAATTTTTGAAAAAAAAAAAATGGAGCTGTTCTTATAGCCTGCGAGTGGCAAATATGTATGTATTAAATTGAACTTAAAGAAACATACTTAGACAAATGTGATTGGTTCTTCAATACATAATTCTATTACATGAAATTATGATGTACTTATGTAGGTTGAACTTGAAGAAATTAATACATGAGAAAAATAAAATCCCTCATGGTTATATATAATATAATATTTTGTTTAGCGGTAAGAAAGCCCTATAAGTGAT

Network for GWHGAAEX018470

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	254	394	1.30E-38
PF00004.28	AAA	535	648	5.40E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06027	NSF, SEC18	Autophagy - yeast	map04138
		Vasopressin-regulated water reabsorption	map04962
		GABAergic synapse	map04727
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.350
SRP064423	SRR2545915	Juvenile tuber	33.510
SRP108465	SRR5643513	five period of Gastrodia elata	35.790
	SRR5643514	five period of Gastrodia elata	33.800
	SRR5643515	five period of Gastrodia elata	36.880
	SRR5643524	five period of Gastrodia elata	38.980
	SRR5643525	five period of Gastrodia elata	26.260
	SRR5643528	five period of Gastrodia elata	42.670
	SRR5643658	five period of Gastrodia elata	27.500
	SRR5643659	five period of Gastrodia elata	30.330
	SRR5643660	five period of Gastrodia elata	30.960
	SRR5643661	five period of Gastrodia elata	29.490
	SRR5643662	five period of Gastrodia elata	33.340
	SRR5643663	five period of Gastrodia elata	31.800
	SRR5643664	five period of Gastrodia elata	27.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	30.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.950
SRP279888	Gastro	Gastrodia elata tuber	43.77
	Juven	Juvenile tuber	58.22
	Mother_Gastro	Mother tuber of Gastrodia elata	53.07
	Mother_Juven	Mother tuber of Juvenile	80.99