Gene detail

Detail information of GWHGAAEX018473/evm.TU.scaffold_95.9

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|512552730\|ref\|YP_008090636.1\|	4.00E-08	FOG: HEAT repeat [Chthonomonas calidirosea T49]
KOG	KOG0211	0	Protein phosphatase 2A regulatory subunit A and related proteins
nr	gi\|514728143\|ref\|XP_004956389.1\|	0	PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like isoform X1 [Setaria italica]
Swissprot	tr\|Q38950\|2AAB_ARATH	0	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
trEMBL	tr\|K3ZRS9\|K3ZRS9_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si029309m}
TAIR	AT3G25800	0	protein phosphatase 2A subunit A2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	201877	228419	+

Transcript Sequence
>GWHTAAEX018473 GCACGATCATGTTCATCCATCGGCTGTGAGTAGTGATTAGTACTTACCTGTCGAATGGATGACACCGGGGCGAAGGGATCGTGCGTCGCGAGGGATAAGACTCCGTAGGGTTTGCTTTATCTCCATTCCATCGAGGGAGATTGGGGGCGGCTGGTACCTAAGAAGCTCTCGTGAACCTGAAGGGAAGTAGGCGTGCTCTTGCAAAACAAGGAATCGAGCGTTCCTTGCCCTAACCCTAAGTCGCAAGAACGAAGGAACAAGCAGTGAGCAGTTTGTGAAGTCTAATGGCTATGCTTGATGAGCCACTTTATCCTATTGCTATTTTAATTGATGAACTTAAAAATGAAGATATTCAGCTGCGATTAAACTCCATTCGCCGGCTTTCTACTATAGCACGGGCACTTGGTGAAGAACGAACTCGGAAAGAATTGATTCCTTTTCTCAATGAGAACAATGATGATGATGATGAAGTACTTCTTGCAATGGCGGAGGAGCTGGGTGTATTTATTCCATATGTAGGCGGCATTGAATATGCTCATGTTTTGCTTCCCCCGTTAGAGACTTTGTGTACTGTAGAAGAAACTTGTGTCCGGGATAAGGCCGTTGAGTCCTTGTGTCGAATTGGTTCACAGATGAAGGAAAGCGATATAGTAGATTGGTTTGTTCCTTTAGTCAAGAGATTAGCAGCAGGTGAATGGTTCACAGCTCGAGTTTCCTCTTGTGGCTTATTTCATATCGCCTACCCAAGTTCTCAAGATGTGTTGAAAGCTGAACTAAGGTCCATATATGGCCAACTTTGTCAAGATGACATGCCTATGGTGAGAAGATCTGCTGCGTCCAACTTGGGCAAATTTGCAAGTACTGTTGAGCAAAGCCATTTGAAGACAGATGTAATGACTATGTTTGAGGATCTTACTCAGGATGATCAAGACTCTGTGCGCCTCTTGGCTGTTGAAGGATGTGCAGCGCTTGGAAAACTGTTGGAACCCCAGGAGTGTGTGTCTCATATACTTCCAGTAATCATTGGTTTCTCTCAGGATAAATCCTGGCGTGTTCGCTATATGGTTGCTAATCAATTGTATGAACTAAGTGAAGCTGTTGGTTCAGAAATTACCAGGTCGGATTTGGTTCCAGCTTATGTTAGACTTCTCCGTGATAACGAAGCTGAAGTTCGCATAGCGGCTGCTGGCAAAGTGACAAAGTTTTGCCAGATTTTGGGCCCTGAACTTGCAATTCAACACATTCTTCCTTGTGTCAAGGAATTATCATCTGACTCTTCTCAACATGTCCGCTCGGCATTGGCATCAGTGATCATGGGGATGGCACCAGTTTTAGGAAAAAATGCGACAATTGAGCAGCTTCTGCCTATCTTTCTTTCTTTGTTGAAAGATGAATTCCCTGATGTTAGATTAAACATCATCAGCAAACTTGACCAAGTAAATCAGGTTATTGGAATCGACCTGTTATCCCAGTCATTGTTGCCTGCAATTGTTGAACTTGCTGAGGACAGGCATTGGCGTGTTCGGTTGGCCATTATTGAATACATTCCTTTGTTAGCGAGCCAGTTAGGCGTGAGATTTTTTGATGATAAGCTTGGTGCTCTGTGCATGCAGTGGCTGGAAGATAAGGTGTTTTCTATCAGAGATGCTGCAGCCAATAATTTGAAGCGGCTTGCTGAGGAATTTGGACCAGAATGGGCAATGCTGCATATTGTTCCACAGGTCCTGGTAAAGATGAATAATCCGCACTATTTGTACCGCATGACCTTTTTACAGTCTATAGCTATGCTATCACCTGTCATGGGCTCGGACATTACTAACCAGAGGCTTTTACCCGTCGTCATTAATGCCTCAAAAGACAGGGTGCCCAACATTAAGTTCAATGTGGCAAAAGTGCTGCAGTCTCTCCTCCCAATAGTGGACTCTTCTGTTGTTGAGAAAACCATCAGACCTTGTCTTGTTGAGCTAAGTGAAGACCCAGATGTTGATGTGAGATACTTTGCGGGCCAAGCGCTGCAATCTTGTGATCAGCTGATGATGTCCGGATAGTTAAACTTAATATTTTTTATACCTCCATCCCTTACCCCTTCCATCGAGAGTGAAATTATTCTATTCTCTCCCCCCCCCCCAAGTTTTTGACTGACTCTGCTAGACTGCATTTCGGTTGTTGTATTAAGTCGCCTCTAATTTACACCCACCAGCAGCCTTACGACTGATATATATATATATATATATATAATGTAATTTTTGTATCCGTTCAGAATTTATAATTGTTTTTCACAAAATGGGAGTTACTTTTTGGATAACCTACAAATTCTTTATTTTTTTATTTTTTTTAATGTGCGAATCTGGCATGTTGGATATGTGAAGGGTGTTTATTTTCTCAAAATATTTTCCCTTGCAATTTTATTTGGAAGCTACAATCGTTGTAAAGGCTTTCCCTACTGCTTTTGCCACTTTTTGTGAGTTTGTCATACACTAACTATAAAATTTGAAGGGATTACAAGTTTTTATAATGTCAG

Network for GWHGAAEX018473

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12755.6	Vac14_Fab1_bd	235	300	5.70E-05
PF13646.5	HEAT_2	361	461	8.40E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03456	PPP2R1	mRNA surveillance pathway	map03015
		TGF-beta signaling pathway	map04350
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Tight junction	map04530
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728
		Long-term depression	map04730

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	231.230
SRP064423	SRR2545915	Juvenile tuber	170.160
SRP108465	SRR5643513	five period of Gastrodia elata	96.920
	SRR5643514	five period of Gastrodia elata	94.560
	SRR5643515	five period of Gastrodia elata	98.430
	SRR5643524	five period of Gastrodia elata	91.000
	SRR5643525	five period of Gastrodia elata	109.890
	SRR5643528	five period of Gastrodia elata	104.420
	SRR5643658	five period of Gastrodia elata	92.650
	SRR5643659	five period of Gastrodia elata	125.660
	SRR5643660	five period of Gastrodia elata	145.240
	SRR5643661	five period of Gastrodia elata	121.720
	SRR5643662	five period of Gastrodia elata	148.840
	SRR5643663	five period of Gastrodia elata	143.840
	SRR5643664	five period of Gastrodia elata	135.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	134.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	168.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	140.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	148.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	149.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	166.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	152.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	153.980
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	153.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	145.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	150.580
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	150.580
SRP279888	Gastro	Gastrodia elata tuber	145.30
	Juven	Juvenile tuber	142.62
	Mother_Gastro	Mother tuber of Gastrodia elata	86.56
	Mother_Juven	Mother tuber of Juvenile	120.57