Gene detail

Detail information of GWHGAAEX018475/evm.TU.scaffold_95.10

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2699	6.00E-173	Predicted ubiquitin regulatory protein
nr	gi\|225433606\|ref\|XP_002273725.1\|	0	PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
trEMBL	tr\|D7SNI5\|D7SNI5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17214.3}
TAIR	AT1G04850	6.00E-173	ubiquitin-associated (UBA)/TS-N domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	229136	289112	-

Transcript Sequence
>GWHTAAEX018475 ACAGGCAAACAAATTACTAATCCTAGGCAACATTTTTCTTCCATCAGCTTCTTCACCGAAGTCCAAATGGCGGGCCTCTCGCTGTGCTGCGGTGACTGCGGCGCACTTCTTCGTAGTGTAGAGGAGGCACAGGAGCACGCGAAGCTCACCTCTCATGCAAGTTTCTCGGAATCTACCGAGGCTGTGCTCAATCTCGTATGCACCACCTGCGGAAAGCCCTGCCGATCCAAAACAGAGTCCGATTTGCACACAAAGAGGACGGGGCATGGGGACTTCTCCGACACAACCTTGGAAGCTGCCATACCGATCGAGTTGGAGGCTCCAAAAGCATCCTCTGTTACTTCCGAGGAGACTATAGCAGCCACTGTCAATCCATCTGACAGCAGGCAATCGGAAGTTTTAGAGATGATAATCTCTGAGGTTGATAAGAAACTACTCGAGGAACTTGAATCAATGGGATTTCCTACTGCTCGAGCTACAAGAGCACTACATTATTCTGGTAATAATAGCATTGAGGCGGCAATTAATTGGGTTGCAGACCATGAAGATGATCCAGATGTTGATGAGATGCCTCTGGTTTCTATTGATAGCTCTGTTGAAACCAGCAAGCAGTCTTTGACTCCAGAGGAACTTAAGTTGAAAACACAAGAGCTAAGGGAACGGGCTCGTAAGAAGAAGGAAGAAGAAGAGAGAATGATGGAAAAGGAACGAGAGAAGGAGAGAATACGTGTGGGTAAAGAGCTTCTTGCTGCTAAGAGAGCAGAGGAAGAAAATGAAAGAAAAAGAATAATAGAATTGCGGAAGTCTGAGAAAGAAGAGGAGAAAAGGGCAAGAGAGAAGATCCGCCAGCGTTTGGAGGAGGATAAGGCTGAGAGGAGGAGGAAGCTTGGATTACCAGCAGAAGATCCCAGGGCCTCGAAACCTGCTACCACAGCCCATGAGGAAGAGAAGAAGAGTTCATTACCGATCAAGCCTGTAACTAAGTTGGAGCAAATGAGAGATTGTCTGCGTTCTCTTAAGCATCATCACAAAGAGGATGACGCAAATGTGAAGAGAGCATTCCAAACTCTCCTAACTTACATCGGCAATATTGCGAGGAATCCTGACGAGGAAAAGTTTAGGAAGATTCGACTAAATAACTCAGCTTTTCAGGATAGAGTTGGTAATTTCCACGGCGGTATCGAGTTTCTGGAGATCTGTGGTTTCAAAAGAGAGGAAGGCGGTGAGCTATTGTTTCTCCCCAGAGAAAAAGTAGATGCTGTGATTCTGAACTCCGCTGGATCCGAGCTGAACTCTGCCATCACAAATCCATTCTTTGGAATTCTTTAGGCCTAGAACTCCGATGCCAACAAGGAGCTGAATTCTGCCTTTACATTCCATATTTTGTTGTTGAGAAACTATTATACTTAAAAGTTAATAACCTTTTATTTGATCATATTATGCTTGTAAGTCTTAATGCTCATCATGCTAATCTCAAATGGTTATTGGAATATTTGTTAGGCATTTACATTAATGTTTTTAGATGCCCATTAAAACTAATATATTCTGATAAATGCATTGTATTAATATTTACGTATGTATTTCATACCATTTATTTT

Network for GWHGAAEX018475

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00627.30	UBA	124	155	4.10E-08
PF09409.9	PUB	328	399	2.20E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	105.080
SRP064423	SRR2545915	Juvenile tuber	93.690
SRP108465	SRR5643513	five period of Gastrodia elata	69.170
	SRR5643514	five period of Gastrodia elata	71.390
	SRR5643515	five period of Gastrodia elata	67.520
	SRR5643524	five period of Gastrodia elata	64.640
	SRR5643525	five period of Gastrodia elata	58.190
	SRR5643528	five period of Gastrodia elata	51.570
	SRR5643658	five period of Gastrodia elata	56.300
	SRR5643659	five period of Gastrodia elata	93.690
	SRR5643660	five period of Gastrodia elata	95.820
	SRR5643661	five period of Gastrodia elata	88.270
	SRR5643662	five period of Gastrodia elata	74.170
	SRR5643663	five period of Gastrodia elata	79.320
	SRR5643664	five period of Gastrodia elata	95.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	82.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	74.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	80.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	89.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	92.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	99.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	91.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	77.980
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	75.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	85.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	78.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	78.130
SRP279888	Gastro	Gastrodia elata tuber	77.12
	Juven	Juvenile tuber	66.10
	Mother_Gastro	Mother tuber of Gastrodia elata	45.52
	Mother_Juven	Mother tuber of Juvenile	49.62