Detail information of GWHGAAEX018477/evm.TU.scaffold_95.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1870 | 0 | Ubiquitin C-terminal hydrolase |
| nr | gi|672142174|ref|XP_008794941.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 5 [Phoenix dactylifera] |
| Swissprot | tr|O22207|UBP5_ARATH | 0 | Ubiquitin carboxyl-terminal hydrolase 5 |
| trEMBL | tr|M0TWL3|M0TWL3_MUSAM | 0 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
| TAIR | AT2G40930 | 0 | ubiquitin-specific protease 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 378677 | 470188 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018477
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06337.11 | DUSP | 32 | 138 | 1.10E-20 |
| PF00443.28 | UCH | 321 | 887 | 8.90E-71 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0016579 | Biological Process | protein deubiquitination |
| GO:0004843 | Molecular Function | thiol-dependent ubiquitin-specific protease activity |
| GO:0036459 | Molecular Function | thiol-dependent ubiquitinyl hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.170 |
| SRR2545915 | Juvenile tuber | 11.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.230 |
| SRR5643514 | five period of Gastrodia elata | 11.620 | |
| SRR5643515 | five period of Gastrodia elata | 10.200 | |
| SRR5643524 | five period of Gastrodia elata | 10.500 | |
| SRR5643525 | five period of Gastrodia elata | 12.270 | |
| SRR5643528 | five period of Gastrodia elata | 12.360 | |
| SRR5643658 | five period of Gastrodia elata | 13.670 | |
| SRR5643659 | five period of Gastrodia elata | 8.590 | |
| SRR5643660 | five period of Gastrodia elata | 8.930 | |
| SRR5643661 | five period of Gastrodia elata | 8.870 | |
| SRR5643662 | five period of Gastrodia elata | 12.310 | |
| SRR5643663 | five period of Gastrodia elata | 12.070 | |
| SRR5643664 | five period of Gastrodia elata | 12.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.050 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.65 |
| Juven | Juvenile tuber | 15.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.44 | |
| Mother_Juven | Mother tuber of Juvenile | 13.95 |