Detail information of GWHGAAEX018479/evm.TU.scaffold_95.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|727528156|ref|XP_010439356.1|1.38E-28PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like [Camelina sativa]
Swissprottr|Q84ME1|LUL3_ARATH5.00E-08Probable E3 ubiquitin-protein ligase LUL3
trEMBLtr|A0A061GHE7|A0A061GHE7_THECC1.00E-27RING/U-box superfamily protein, putative isoform 1 {ECO:0000313|EMBL:EOY28828.1}
TAIRAT3G250303.00E-26RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000101514242515412-
Transcript Sequence

Network for GWHGAAEX018479

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.5zf-C3HC4_31161617.50E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.370
SRR2545915Juvenile tuber12.050
SRP108465SRR5643513five period of Gastrodia elata32.550
SRR5643514five period of Gastrodia elata28.450
SRR5643515five period of Gastrodia elata48.290
SRR5643524five period of Gastrodia elata35.170
SRR5643525five period of Gastrodia elata6.580
SRR5643528five period of Gastrodia elata9.020
SRR5643658five period of Gastrodia elata5.950
SRR5643659five period of Gastrodia elata85.640
SRR5643660five period of Gastrodia elata68.490
SRR5643661five period of Gastrodia elata80.980
SRR5643662five period of Gastrodia elata35.600
SRR5643663five period of Gastrodia elata28.120
SRR5643664five period of Gastrodia elata12.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.380
SRR6049655Rhizomagastrodiae_C368-T10_good_111.390
SRR6049656Rhizomagastrodiae_C368-T07_good_124.030
SRR6049657Rhizomagastrodiae_C368-T07_good_115.620
SRR6049658Rhizomagastrodiae_C368-T04_good_116.950
SRR6049659Rhizomagastrodiae_C368-T04_good_110.590
SRR6049660Rhizomagastrodiae_C368-T01_good_113.470
SRR6049661Rhizomagastrodiae_C368-T04_good_116.090
SRR6049662Rhizomagastrodiae_C368-T01_good_121.960
SRR6049663Rhizomagastrodiae_C368-T01_good_117.610
SRR6049664Rhizomagastrodiae_C368-T10_good_129.210
SRR6049665Rhizomagastrodiae_C368-T10_good_129.210
SRP279888GastroGastrodia elata tuber 16.31
JuvenJuvenile tuber13.77
Mother_GastroMother tuber of Gastrodia elata 53.87
Mother_JuvenMother tuber of Juvenile 20.42