Detail information of GWHGAAEX018483/evm.TU.scaffold_95.18
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434403183|ref|YP_007146068.1| | 3.00E-31 | chitinase [Cylindrospermum stagnale PCC 7417] |
| KOG | KOG2806 | 9.00E-55 | Chitinase |
| nr | gi|695033469|ref|XP_009404220.1| | 3.28E-160 | PREDICTED: chitinase-3-like protein 1 [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0T696|M0T696_MUSAM | 2.00E-154 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P11980_001} |
| TAIR | AT4G19810 | 9.00E-55 | Glycosyl hydrolase family protein with chitinase insertion domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 629130 | 630996 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018483
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00704.27 | Glyco_hydro_18 | 26 | 353 | 3.00E-52 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01183 | E3.2.1.14 | Metabolic pathways | map01100 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0008061 | Molecular Function | chitin binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.540 |
| SRR2545915 | Juvenile tuber | 4.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.990 |
| SRR5643514 | five period of Gastrodia elata | 7.920 | |
| SRR5643515 | five period of Gastrodia elata | 8.940 | |
| SRR5643524 | five period of Gastrodia elata | 8.250 | |
| SRR5643525 | five period of Gastrodia elata | 1.110 | |
| SRR5643528 | five period of Gastrodia elata | 9.270 | |
| SRR5643658 | five period of Gastrodia elata | 1.520 | |
| SRR5643659 | five period of Gastrodia elata | 3.850 | |
| SRR5643660 | five period of Gastrodia elata | 4.310 | |
| SRR5643661 | five period of Gastrodia elata | 5.360 | |
| SRR5643662 | five period of Gastrodia elata | 5.410 | |
| SRR5643663 | five period of Gastrodia elata | 4.050 | |
| SRR5643664 | five period of Gastrodia elata | 4.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.650 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.84 |
| Juven | Juvenile tuber | 3.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.61 | |
| Mother_Juven | Mother tuber of Juvenile | 6.94 |