Detail information of GWHGAAEX018486/evm.TU.scaffold_95.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743813828|ref|XP_010929836.1| | 1.99E-93 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 [Elaeis guineensis] |
| Swissprot | tr|Q56XP9|ERFL1_ARATH | 6.00E-44 | Ethylene-responsive transcription factor-like protein At4g13040 |
| trEMBL | tr|M0T4P9|M0T4P9_MUSAM | 8.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P06510_001} |
| TAIR | AT4G13040 | 1.00E-43 | Integrase-type DNA-binding superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 675104 | 698475 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018486
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 108 | 150 | 9.70E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.840 |
| SRR2545915 | Juvenile tuber | 21.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.260 |
| SRR5643514 | five period of Gastrodia elata | 14.210 | |
| SRR5643515 | five period of Gastrodia elata | 14.640 | |
| SRR5643524 | five period of Gastrodia elata | 16.020 | |
| SRR5643525 | five period of Gastrodia elata | 29.920 | |
| SRR5643528 | five period of Gastrodia elata | 24.320 | |
| SRR5643658 | five period of Gastrodia elata | 33.830 | |
| SRR5643659 | five period of Gastrodia elata | 14.750 | |
| SRR5643660 | five period of Gastrodia elata | 16.100 | |
| SRR5643661 | five period of Gastrodia elata | 16.370 | |
| SRR5643662 | five period of Gastrodia elata | 15.210 | |
| SRR5643663 | five period of Gastrodia elata | 12.500 | |
| SRR5643664 | five period of Gastrodia elata | 12.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 24.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.930 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.48 |
| Juven | Juvenile tuber | 17.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.31 | |
| Mother_Juven | Mother tuber of Juvenile | 21.50 |