Gene detail

Detail information of GWHGAAEX018488/evm.TU.scaffold_95.23

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|146328793\|ref\|YP_001209360.1\|	1.00E-09	RNA recognition motif-containing protein [Dichelobacter nodosus VCS1703A]
KOG	KOG4208	5.00E-71	Nucleolar RNA-binding protein NIFK
nr	gi\|743783109\|ref\|XP_010921321.1\|	3.84E-100	PREDICTED: MKI67 FHA domain-interacting nucleolar phosphoprotein-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|P19683\|ROC4_NICSY	7.00E-07	31 kDa ribonucleoprotein, chloroplastic (Precursor)
trEMBL	tr\|M0SFQ1\|M0SFQ1_MUSAM	4.00E-97	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P18350_001}
TAIR	AT5G04600	5.00E-71	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	742188	754626	+

Transcript Sequence
>GWHTAAEX018488 CGTAATCGCGCTAAACCTAATCACAGCTTCTCTCGGCTTTTCTTCTGAAACCTGATCCGCCGCTTCCTAATAGCATCCTCCGCTCTTCCTAGAATACGGAAGTGCATCCTCGCCTATTCTCTCTAGCAGTCCTTCCAGTTCTTCTCCCCGCTGCAATTAACGTTTTCTCCTGCAGTTCCTAAACCTAATCGCAGTTCCTAATCTCAGTTCCCAATTGCAGTTACTAAGACGACGACGGTTGAGAAGCTTGTCCTCGTGATTTCTCATCCTCTTGAGTGATTTTTGATTAAACCCGTGACGAACGAAGACGCCACCCGTGACTAACGAATCGAAGACGCCGCAGTCTTTTTCTGAATCTGTGGGGTTTTTATTGGCTATTGTCAGTGAGCTGTTGCATTCTGTCTCTTGTGTGAATCAGAATGGGTGCAAAAGCAAAGAAGTCGTTAAAAAAGAAACTATCTAAAGCCTCTCAAGTTGCTGCTGCTCGTCGTGCAAAGGAACAGGCTTTGGACTATTTGCCGTTAGAACTGGGTCAGGCTGCTAAACTTCCTGAAAAAGAAGAGGAGAATAAGTCAACTGCTCTATATATTGGTCATATACCTCATGGATTCTATGAGGAACAAATGGAAGGTTTTTTCAAGCAATTCGGTAAGGTTAAGAGATTGAGGATTGCTAGGAGCAGAAAGACTGGAAGGTCAAAGCACTATGGCTTCCTTGAATTTGAAAGTCCAGCGGTGGCTAGGGTTGTGGCTGATGAGATTCATAACTATCTTTTGTTTGAGCATAACCTTCAAATTCATTTGATTCCCCCAGAAAAAATTCACCCAAAATTATGGAAAGGAGTGTGTCAAATTCAGAATCCAAAGAGGTGGATTGAAATCGAAAGAAGTCGACATAACATGGAGAGAACCAGAGAACAACATCAAAAAATGGTGCAAGGAATTTTGAAGCGTGATGAAAAAAGGCGCAAACGCATACAGGATGCTGGTATTCAGTATGAATGTCCCGCCTTTGTGGGACAGATTCAACCTGCAAGTAAGAAGATTAAATTCACGTCAGAGGAAGATGAGGAGTGAAGCATTGTCACTCCTTTATTTTTTAGATTTTCTTTATATTAGCTGAGGAAGATTAAATTATTCTGTCTGTTATACCCAATCATGTTGTTTGGGAAACTTGGTTCTAAATTTTCTTTTTTTTAAATTATTTGCAGTTCCGATCACCTGATATGCTATATATGATAAATGATATAACGATATAATCATGTTATTTGGGATTAAATGATCCTGCGTCTGTTATGATCTAAGGATATAATCACCCAAAGCAGATTTAATTTGGTGAATTGAATCCATCACTTGTGAATTTAATCTGGTGTCCATCACCTGCAATTTTTTTTATATCGCGTTGTTTGGGATTAAATGATGAAATGATATAATCCCTTTTTCA

Network for GWHGAAEX018488

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	55	124	9.20E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	54.740
SRP064423	SRR2545915	Juvenile tuber	55.060
SRP108465	SRR5643513	five period of Gastrodia elata	38.200
	SRR5643514	five period of Gastrodia elata	34.680
	SRR5643515	five period of Gastrodia elata	37.160
	SRR5643524	five period of Gastrodia elata	33.950
	SRR5643525	five period of Gastrodia elata	30.860
	SRR5643528	five period of Gastrodia elata	34.980
	SRR5643658	five period of Gastrodia elata	31.790
	SRR5643659	five period of Gastrodia elata	59.470
	SRR5643660	five period of Gastrodia elata	55.880
	SRR5643661	five period of Gastrodia elata	55.600
	SRR5643662	five period of Gastrodia elata	61.330
	SRR5643663	five period of Gastrodia elata	52.630
	SRR5643664	five period of Gastrodia elata	45.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	40.450
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	43.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	52.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	52.020
SRP279888	Gastro	Gastrodia elata tuber	76.57
	Juven	Juvenile tuber	40.97
	Mother_Gastro	Mother tuber of Gastrodia elata	43.20
	Mother_Juven	Mother tuber of Juvenile	41.97