Gene detail

Detail information of GWHGAAEX018489/evm.TU.scaffold_95.24

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2248	4.00E-179	3'-5' exonuclease
nr	gi\|672142729\|ref\|XP_008795226.1\|	0	PREDICTED: small RNA degrading nuclease 5 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q8L7M4\|SDN5_ARATH	0	Small RNA degrading nuclease 5
trEMBL	tr\|M0SF66\|M0SF66_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P16500_001}
TAIR	AT5G25800	4.00E-179	Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	754734	813251	-

Transcript Sequence
>GWHTAAEX018489 GCAGTATTTTCTGAACCGGTTTAAGACATCGGGTCAGAGGTCGCTTAAATAGCGCGGTGCAGGGCAGAAGATTCAGTCCGGTGATTTCTCCATTGTTCTCTGAAATCCCTCCCTGCAGTCCCGCATGGCGTCCTTCCTGAAGAAGAGCGGCACGAACAGCTCATCGGGCACTCCAAACACTAACGAAGGGAAGCGCGTTTGCACCGACGATGGCCACATTGATATCTACGGTCCCAATGGAAAAGCTGATGTTATTATTAAGAACATAGAGACTAAAGCAGTGTATCTTCAGGACATTCAAGGAATCGTGACCTGGGTTTTAGGTGATGGTCTAATGCCATCTTGGATTTTTATTAAGAACAAGCCTCTTGTTCAGAAGGTTGTGCTTCTCCATCTTCCTGGATTGGATGCTGAGCTGTACCATTCAAATCCTCACCTTTTTTCAGGACTAAGCAAATGTTGTGGATCTCCAAAGCAAGTTTTATCTCTAAGCTGCGTGGCAGATGAGACTCAAACAGTCGGTGCACTTTTAACATGCACAGTGAAAAGAAAACGTGATGAACTTGAATCCAATCAGCAGTTTCATCGTTCAAATTTGGCTGAAGAGAGTGCGCTCCTTTTGAAGAATCAAAAGGATCTTCCTTTCCCAATTATCTACTATACACATTCACTTACAGAGCTGGAGGAGAATGGATATTGCATTAGTCACCCAGATTTTATATCAACAGTTCCTGCTCCTGCTGGATCTTCTCCTCATACAATCCTTGCTCTTGATTGTGAAATGTGTATAACTGCCGCGGGTTTTGAGCTTACTAGGATAACTTTAGTTGGTACATGCGGAGAGGTTGTGCTAGACAAGCTTGTTAAACCTTCCAACCCTGTCCTTGATTACAATACTAGGTACAGTGGAATCACCGAGGAGATGCTGAATGGTGTGACAACAACGTTCAAGGATATCCAGGAAGAGTTTCTTAAACTTGTTTATAAAGAAACCATTCTTTTGGGCCATTCACTTGAAAATGATCTTTCAGCATTGAAGATATCTCATCAGTTAATAATTGATTCTGCTATTTTATACAAAAACTATCGTCAGGGGTATAAGATAGCCTTGAGGGTATTATCTGAAAAGTTCCTTTCAAGACAGATCCAAGCATCAGCAAAAGGACATGATAGTGTTGAAGATGCAAGAGCAGCATTAGAACTAGTTTTGCTGAAGTTCAAATACGGGCCACAATTTGGTTCTCATTCATCAACTGCTCGTAAGAAGTTGGTCTCTGTCCTGCATGAAAATGGAAACACTTGCTCCCTCATTGATGAGACGCTGACAATAAAGCGATATTCAGATGGATCATGTAATGCCATCCCTGTTTCCTCAGATGATGACGCCCTATCTAGAACCATTAAAGAATTAAAGAAGGAAAAAGTGAAGTTCATTTGGACCAGATTTTTAGAACTGAATTCATATTACGAAAAACAAGCAGATGATTCAGCAAAGCTGGGGTATAGAATTGCTCAGACGATTTCATTGCATACTTGCAGTAGCAAATTATCTGAGGGCGATGTGCGGAGCGGCTGTATGTCAATTGTTGAGATCAGAGATATCCTTACTCGTTTGGATGCAAGAGTTCAAAAGCTTTACGACGCATTGCCTCCTAATGTTTTGCTCATTGTATCTACTGGCCATGGAGATACAGCTATTGTCAAAAGGTTGAGAACGATGCTCAGAGAGAAAATCGGGCCCCCTGTTAGCCGTGAGGATATATTGAGAGCTCTTGAACAGCTTCAATCACAGGCAGAGAAGGCTTTATGTTTTGCTTCTGTGAAGCACTTCGCATAAAATGCTTTTTTTGAATTGTGATGAGGGCTGAACTCAAAATATATTAAAATGAAAGTTCTCGATTACAAGATTGTGAAAAACAGCACAATAAAAAGAATTTGATACTGATAAAAAGCTCAACTAGAGCAGGCAATCTTATCCTAAAAGGACCGGGAGGAGCGCGAAGGAGGGAATGCTACATCTTGCACAGGTCTCCCGCAGGACAGGGGACACGTTCTGGTGGCTCAAGAGACTATCTAGCCAAGCTTGAAGATGCAGGCCTCGCATATTAAGTTGTTTATTTTACGTATCTAATCAACACATAATATTCAGGCTGCTTTTGGGACCAGCTTTCTAGTTTCGGTGTTTTATCGTTTGGGAGAGTTCCTTTTTGTTTGAACGGCCTGATTGCCTTTTTACCAGTCAGCCATAAAAATTATAGTTTTGGGCATAAGCTTTTGCCCGTTGCCATTAATCGCTGATGGCATATACACTAGTATTGCAACAAAGAATTCAACGGAAGCCTCACAGCAGCATTTATTACAGTAGTTTCACGATGATTTCTTAAGACAGTTGCAGCTAACTCAAATAGAGCCTTAACTGTTTTAGCTTTTATCAAATCTGTGGGAATTTTGCCTTGGATCGTAAGTAATGGGCCTCATTTTTCCCCCATTTTATAATCCATGGAGATTTCTAACACTTTCATATTAATTGCTTCATAAT

Network for GWHGAAEX018489

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00929.23	RNase_T	215	360	8.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14570	REX1, REXO1, RNH70	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.500
SRP064423	SRR2545915	Juvenile tuber	14.430
SRP108465	SRR5643513	five period of Gastrodia elata	4.350
	SRR5643514	five period of Gastrodia elata	4.780
	SRR5643515	five period of Gastrodia elata	4.680
	SRR5643524	five period of Gastrodia elata	5.650
	SRR5643525	five period of Gastrodia elata	3.630
	SRR5643528	five period of Gastrodia elata	1.890
	SRR5643658	five period of Gastrodia elata	1.900
	SRR5643659	five period of Gastrodia elata	3.470
	SRR5643660	five period of Gastrodia elata	3.360
	SRR5643661	five period of Gastrodia elata	3.460
	SRR5643662	five period of Gastrodia elata	4.670
	SRR5643663	five period of Gastrodia elata	4.120
	SRR5643664	five period of Gastrodia elata	4.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.270
SRP279888	Gastro	Gastrodia elata tuber	7.99
	Juven	Juvenile tuber	3.58
	Mother_Gastro	Mother tuber of Gastrodia elata	6.88
	Mother_Juven	Mother tuber of Juvenile	5.46