Gene detail

Detail information of GWHGAAEX018491/evm.TU.scaffold_95.26

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|312130457\|ref\|YP_003997797.1\|	4.00E-129	glycine hydroxymethyltransferase [Leadbetterella byssophila DSM 17132]
KOG	KOG2467	0	Glycine/serine hydroxymethyltransferase
nr	gi\|225433510\|ref\|XP_002266276.1\|	0	PREDICTED: serine hydroxymethyltransferase 4 [Vitis vinifera]
Swissprot	tr\|O23254\|GLYC4_ARATH	0	Serine hydroxymethyltransferase 4
trEMBL	tr\|F6GWF3\|F6GWF3_VITVI	0	Serine hydroxymethyltransferase {ECO:0000256\|RuleBase:RU000585}
TAIR	AT4G13930	0	serine hydroxymethyltransferase 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	830016	833010	-

Transcript Sequence
>GWHTAAEX018491 AAATTTCACTACATGTCAAGCGTCTATATTTCTGAATTTATTTTGCAGCTATTTTTAGAGGATGCAAATTGACTAGCTGAAAATTAAAGGGTTGGGCTCACAGGTCGACAGGCCTTCAAAAAAAGCGAGTGGGTAAAATGGACGGCAACCCAACAACCACCCACGCTTAGGCTGTGGTTGGTGTCCCTACCTTCTTCGCCAAAGCCGCCCTTATAAACCCTTGCCACCTCTCTCGGCCCTTGATCATTTCTCCGTCATCCTCTGCTATGGAAGCCGTCGCAGCCTGGGGCCTTACCCCTCTCTCCGTCGTCGACCCAGACATCCATGACCTCATCGAGAAGGAGAAGCGCCGCCAGAGCCGCGGAATCGAGCTTATTGCCTCGGAAAACTTCACATCCTTCGCAGTCATCGAAGCCCTCGGCAGCGCCCTCACCAACAAGTACTCTGAGGGCATGCCTGGTAACCGCTACTATGGAGGCAACGAGTTCATTGACGAGATCGAGAACCTCTGCAGATCTCGCGCTCTCCAAGCCTTCCATCTGGATCCCGAGAAATGGGGCGTCAACGTCCAGCCGTACTCCGGGAGCCCGGCCAACTTCGCCGCCTACACAGCACTCCTTAACCCCCATGATCGGATAATGGGGCTTGATCTGCCCTCCGGCGGCCATCTCACTCATGGATACTACACCGCCGGAGGAAAGAAGATCTCCGCCACTTCGATCTACTTTGAGAGCCTGCCCTATAAGGTGAATTCCACCACCGGGTTCTTGGATTATGATCGGCTCGAGGAGAAGGCCTTGGATTTCCGGCCTAAACTCATAATATGTGGTGGGAGTGCGTATCCGAGAGATTGGGATTATGGGCGGTTCAGATCTATTGCGGACAAGGTCGGGGCGCTGTTGCTTTGCGATATGGCTCATATCAGTGGTCTTGTTGCTGCTCAGGAAGCTAATAATCCATTTGAGCACTGTGACGTCGTCACAACGACAACCCATAAGAGCCTTAGAGGTCCAAGATCCGGCATGATCTTCTACAGGAAGGGCCCGAAGCCGCCCAAGAAGGGACAGCCCGAGAACGCTGTTTACGAATTTGAAGACAAGATAAACTTTGCAGTTTTTCCTTCACTCCAAGGTGGTCCTCACAATCACCAGATTGCTGCATTGGCTGTTGCATTGAAGCAGGTCATGACGCCCGGTTTCAAGGCTTATTCTAAGCAAGTTAAGGCAAACGCTGCTGCCCTCGGAAAGTATCTGATAAGCAAGGGATATAATATTGTGACCAATGGAACAGAGAATCACCTTGTCCTCTGGGATCTTCGCCCTCTTGGCTTGACCGGGAACAAGGTGGAGAAGGTTTGTGATCTCAGCAACATAACACTCAACAAAAATGCAGTGTTTGGAGACAGCAGTGCTTTGGCTCCCGGCGGTGTCCGGATAGGTGCTCCTGCCATGACTTCAAGGGGACTTGTGGAGAAGGATTTTGAGCAGATTGCAGAGTTTCTGCACCAAGCAGTGACCATCACGCTCAGCATCCAGAAGGAGCATGGGAAGCTTCTCAAGGACTTCAATAAGGGTCTGGCAAACAATGAGGATATCCAGAAGCTCAAAGCTTCAGTGGAGAAGTTTTCAGCTTCGTTTGACATGCCGGGCTTTGATGCCTCCGAAATGAAGTACAAGGATTAGGCTTATACTAGAAGCGAGAGCCAGGCAAGGCCCTCCTTTTTCACCTAACGTTAAATTCTCCTCTGCCTTTGGTTTTCCATACTGTTATCATCTCTATTTGGTTTTGATTATGAGGTTCTGTTCTTGTTTGAGATATAATAATAGTAATTCATATGAGTGGCAAAGTTGCAATTGATAGAATTTGAACTGATATGGAGTACAGTTGCGATTCTCTTGATTGCTTGTGGAGTCTTTTATGTTTATTAAACTTTAAAGCTGCAGAATGTTGTTGAATTGTATCCCCCATTTGAATATTCATTTCAATTAAATTTCAAACATCCCCTCTATAAATTTTCCTGACATTTTGTTGCCTAGATTTGATGAATTTGACTAGTTTTGATAATCCCTTTGATGATATTATTCATGATGTATAAATGATGCCATTTATGGCACAAAAGCATGATGTAACTACGATGCATCAAATTAAGGACACTATAATCGATTAGACTTAATAAAAAAAATGACAGTAAAAATATATACTGAATGACAATCAAATAAAACACAAG

Network for GWHGAAEX018491

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00464.18	SHMT	13	411	1.30E-185

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00600	glyA, SHMT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glyoxylate and dicarboxylate metabolism	map00630
		Methane metabolism	map00680
		Pyrimidine metabolism	map00240
		Cyanoamino acid metabolism	map00460
		One carbon pool by folate	map00670

Gene Ontology

GO term	Ontology	Name
GO:0035999	Biological Process	tetrahydrofolate interconversion
GO:0019264	Biological Process	glycine biosynthetic process from serine
GO:0030170	Molecular Function	pyridoxal phosphate binding
GO:0003824	Molecular Function	catalytic activity
GO:0004372	Molecular Function	glycine hydroxymethyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	67.760
SRP064423	SRR2545915	Juvenile tuber	66.670
SRP108465	SRR5643513	five period of Gastrodia elata	188.780
	SRR5643514	five period of Gastrodia elata	118.160
	SRR5643515	five period of Gastrodia elata	311.900
	SRR5643524	five period of Gastrodia elata	185.770
	SRR5643525	five period of Gastrodia elata	201.390
	SRR5643528	five period of Gastrodia elata	420.680
	SRR5643658	five period of Gastrodia elata	345.890
	SRR5643659	five period of Gastrodia elata	183.030
	SRR5643660	five period of Gastrodia elata	162.960
	SRR5643661	five period of Gastrodia elata	203.940
	SRR5643662	five period of Gastrodia elata	211.790
	SRR5643663	five period of Gastrodia elata	188.260
	SRR5643664	five period of Gastrodia elata	103.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	101.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	129.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	126.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	88.370
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	64.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	94.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	89.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	171.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	135.220
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	154.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	154.130
SRP279888	Gastro	Gastrodia elata tuber	148.60
	Juven	Juvenile tuber	86.20
	Mother_Gastro	Mother tuber of Gastrodia elata	381.09
	Mother_Juven	Mother tuber of Juvenile	224.99