Detail information of GWHGAAEX018495/evm.TU.scaffold_95.33
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1986 | 0 | Vesicle coat complex COPII, subunit SEC23 |
| nr | gi|743877949|ref|XP_010908064.1| | 0 | PREDICTED: protein transport protein SEC23-like isoform X1 [Elaeis guineensis] |
| trEMBL | tr|C6JRL5|C6JRL5_SORBI | 0 | Putative uncharacterized protein Sb0010s021250 {ECO:0000313|EMBL:EES20133.1} |
| TAIR | AT3G23660 | 0 | Sec23/Sec24 protein transport family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 967539 | 989794 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018495
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04810.14 | zf-Sec23_Sec24 | 66 | 105 | 9.20E-14 |
| PF04811.14 | Sec23_trunk | 144 | 415 | 4.40E-72 |
| PF08033.11 | Sec23_BS | 426 | 529 | 2.00E-29 |
| PF04815.14 | Sec23_helical | 544 | 642 | 1.50E-21 |
| PF00626.21 | Gelsolin | 657 | 744 | 2.50E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14006 | SEC23 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006888 | Biological Process | ER to Golgi vesicle-mediated transport |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0090114 | Biological Process | COPII-coated vesicle budding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0030127 | Cellular Component | COPII vesicle coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 62.370 |
| SRR2545915 | Juvenile tuber | 88.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 86.580 |
| SRR5643514 | five period of Gastrodia elata | 86.180 | |
| SRR5643515 | five period of Gastrodia elata | 89.780 | |
| SRR5643524 | five period of Gastrodia elata | 94.340 | |
| SRR5643525 | five period of Gastrodia elata | 60.390 | |
| SRR5643528 | five period of Gastrodia elata | 75.990 | |
| SRR5643658 | five period of Gastrodia elata | 71.790 | |
| SRR5643659 | five period of Gastrodia elata | 93.860 | |
| SRR5643660 | five period of Gastrodia elata | 84.960 | |
| SRR5643661 | five period of Gastrodia elata | 88.480 | |
| SRR5643662 | five period of Gastrodia elata | 85.010 | |
| SRR5643663 | five period of Gastrodia elata | 91.640 | |
| SRR5643664 | five period of Gastrodia elata | 77.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 80.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 89.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 83.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 71.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 67.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 58.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 67.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 67.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 85.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 78.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 98.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 98.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 79.36 |
| Juven | Juvenile tuber | 92.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 74.66 | |
| Mother_Juven | Mother tuber of Juvenile | 112.66 |