Detail information of GWHGAAEX018496/evm.TU.scaffold_95.34


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG03232.00E-133TFIIF-interacting CTD phosphatases, including NLI-interacting factor
nrgi|695046890|ref|XP_009411300.1|0PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Musa acuminata subsp. malaccensis]
Swissprottr|Q00IB6|CPL4_ARATH9.00E-134RNA polymerase II C-terminal domain phosphatase-like 4
trEMBLtr|M0TL63|M0TL63_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P27270_001}
TAIRAT5G58000_22.00E-133Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010110003641073499+
Transcript Sequence

Network for GWHGAAEX018496

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03031.17NIF1502988.60E-25
PF00533.25BRCT3644372.10E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0004721Molecular Functionphosphoprotein phosphatase activity
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.160
SRR2545915Juvenile tuber25.820
SRP108465SRR5643513five period of Gastrodia elata20.890
SRR5643514five period of Gastrodia elata26.220
SRR5643515five period of Gastrodia elata24.710
SRR5643524five period of Gastrodia elata25.070
SRR5643525five period of Gastrodia elata27.520
SRR5643528five period of Gastrodia elata32.130
SRR5643658five period of Gastrodia elata30.020
SRR5643659five period of Gastrodia elata20.370
SRR5643660five period of Gastrodia elata20.340
SRR5643661five period of Gastrodia elata22.230
SRR5643662five period of Gastrodia elata17.160
SRR5643663five period of Gastrodia elata16.740
SRR5643664five period of Gastrodia elata15.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.310
SRR6049655Rhizomagastrodiae_C368-T10_good_120.640
SRR6049656Rhizomagastrodiae_C368-T07_good_120.010
SRR6049657Rhizomagastrodiae_C368-T07_good_118.500
SRR6049658Rhizomagastrodiae_C368-T04_good_116.480
SRR6049659Rhizomagastrodiae_C368-T04_good_120.280
SRR6049660Rhizomagastrodiae_C368-T01_good_117.990
SRR6049661Rhizomagastrodiae_C368-T04_good_118.900
SRR6049662Rhizomagastrodiae_C368-T01_good_121.650
SRR6049663Rhizomagastrodiae_C368-T01_good_121.980
SRR6049664Rhizomagastrodiae_C368-T10_good_127.030
SRR6049665Rhizomagastrodiae_C368-T10_good_127.030
SRP279888GastroGastrodia elata tuber 19.64
JuvenJuvenile tuber18.84
Mother_GastroMother tuber of Gastrodia elata 46.09
Mother_JuvenMother tuber of Juvenile 28.38