Gene detail

Detail information of GWHGAAEX018497/evm.TU.scaffold_95.35

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|728837053\|gb\|KHG16496.1\|	7.47E-99	Transcription factor bHLH62 -like protein [Gossypium arboreum]
Swissprot	tr\|Q9SRT2\|BH062_ARATH	4.00E-72	Transcription factor bHLH62
trEMBL	tr\|M0TAS3\|M0TAS3_MUSAM	3.00E-106	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P27780_001}
TAIR	AT3G07340	1.00E-71	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	1134460	1137163	+

Transcript Sequence
>GWHTAAEX018497 CTCTTCTTTAATTCAAGTACAGAGAGCGAACAAATCTCCAAAAAGAAAAAAAAGAACTGCCAAGGCACGGCTCAGTTGGACGTTCAAGGCCCGGCATCTTCTAATCGCCGCTCGGAGGCACCATTCCCAACCATTTTTTTTTTAATTTCAATCTTTTTTTCTGTATATTATATATACGTAAAGGTCAACAGCTCTGCTTTTTTTCCCTTCCTTCCCTCTCACTCCTTCCCTCCTTTCACTTTCTTCCAAATTCTCCAAAAAAAAGCCACCTTTCCAGGTATCCCGCATTCCACTCCCTCCTCAGCTTGCCAATGGAAAAGGGAGCATTTTTAGGCAACCCAGGCCATCTTAACCTCATTTTGGAACAGACAATAGATCAAAGCTCCAATTTTGACTCTGCTCTCAGCTCTCTTGTCTCTTCTCCTTCCTCCAATCCTCCGCCATCTAATGGCGATAGTCTGGTGATCCATGAGCTCATTGGACGGCTTGGAAGCATCTGCAACTCCCACCAAAGCGCCAACAATTCTTGCTATAGCACTCCTTTGAATTCCCCTCCCAAGCTTAATCTCTCCATTGCCTCCCATCCAGCTCACATGGCATTGCCCGCAAGGTGTTTGAACTTTGGCTGCAAAGGCATGCCGAGCGGCGGAGTTTCTCAGGAAGAGTCTTCCGGGTCGGGCAATGCAAAGAAAAGGAAAGCGACGACGAAGGGAAAAGGAAAGGAGGCTCCTTTATCATCTACCATCACGGCCGCCAGCATTTCCCCCAAGAAGGCTGGAGCTGGAGGGTTGAATGCAAAGAGGAGCAAACTCTCAGAGGAAACTGGGGTTGAGGATCAAAGCACTAAGACATCTGAGGCTTCCAAGGACTACATTCATGTTCGGGCAAGAAGAGGCCAAGCCACTGATAGTCACAGCCTCGCCGAGCGGGTTAGAAGAGAGAAGATTAGTGAAAGGATGAAACTTCTACAAGATCTTGTGCCTGGTTGCAGTAAGGTGACTGGGAAGGCTGTGATGCTTGATGAAATTATTAACTATGTACAGTTGTTACAACGCCAAGTTGAGTTCCTCTCTATGAAGCTTGCCACTTCAAATCCTCTTCTGGACTTCAGCATGGAAAATTTTGTAGCTAAGGATATTGAGGTTCATCAGAATTGTGGGACTCTTCCACCTCACGCAGTGTATCCATTGGAGGCCCCATCAAGCTCATTTTCTTTTGCAAGCCTGCCTGAGAGAACCCCGACACTAATCTCCATTAATGGAGTCGAGATGGAGAGTCAAGTGAACGCTTTGAACCTCGGCAGAAGCCTTAGCATGCAGATGCCTCCTCTCGAGGGCTTCATGGATGCCTCATGTCAGCTTGGGACATTCTGGGATGATGATCTCCGGACAGTAGTTCAGATGGGTTTCAACCAAAATAAGGAGAACATCTTCTCCTCTCAAGAATTTCAAGGCTCTATGACCACTAGTCAAATGGAAATTGAACTATGAGGGCAAGAGGATATTGTACATATCAAGAAAGCTTTATTTATTATCAATGAAGCTTCAGAGCTAATCAGCCAAGCCATGAGCTTCAAGAGAGCAAAGACTGCATTGAAGTTGAAATTTAGGAATGATGCCATGATAAATTTTTTTTTTTTTATTTCGTAATCTACTCAATGTTAGGAATCATAATTTTCATCTTGTTTGTTGAATATTTCTGAAATTATCAATGGATAAATGTTGAAATTGATGTAAGGAAGCTTTCCATTAATTTCTACTCAACATTTATTTCTCTTTTAGCTGGAACCAGCTCTTGGTTGTGAATAAGAAGTCCCTTTCTTAACAACTGCTGATAAGCACACAGCTTTCAACCACCAGCATTTGTTCATCTAGCAAGGATGAGGAGCTGTACTCCAATGTTGGTTTGTTAGGCAAATAGTTTAGCTGGGACAAAGAAAAACATCAAAATCAACAGCTTGGCATGTTTGAATTTTTGCAAGATTCATTACACTGAAGAAAAGTCATTGTTGTTCGTCAAAACGAGTGAAAGATTTAGATCTAATTCTAAAAGAATGGTGCTGCAG

Network for GWHGAAEX018497

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.25	HLH	200	247	4.40E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.810
SRP064423	SRR2545915	Juvenile tuber	18.310
SRP108465	SRR5643513	five period of Gastrodia elata	28.540
	SRR5643514	five period of Gastrodia elata	14.940
	SRR5643515	five period of Gastrodia elata	23.140
	SRR5643524	five period of Gastrodia elata	12.000
	SRR5643525	five period of Gastrodia elata	6.630
	SRR5643528	five period of Gastrodia elata	2.950
	SRR5643658	five period of Gastrodia elata	8.080
	SRR5643659	five period of Gastrodia elata	6.070
	SRR5643660	five period of Gastrodia elata	3.420
	SRR5643661	five period of Gastrodia elata	6.760
	SRR5643662	five period of Gastrodia elata	7.530
	SRR5643663	five period of Gastrodia elata	10.930
	SRR5643664	five period of Gastrodia elata	3.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.950
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	23.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.250
SRP279888	Gastro	Gastrodia elata tuber	3.26
	Juven	Juvenile tuber	2.55
	Mother_Gastro	Mother tuber of Gastrodia elata	0.58
	Mother_Juven	Mother tuber of Juvenile	0.75