Detail information of GWHGAAEX018498/evm.TU.scaffold_95.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3454 | 3.00E-47 | U1 snRNP-specific protein C |
| nr | gi|672178978|ref|XP_008809645.1| | 8.88E-84 | PREDICTED: U1 small nuclear ribonucleoprotein C-like [Phoenix dactylifera] |
| Swissprot | tr|F6HQ26|RU1C_VITVI | 1.00E-57 | U1 small nuclear ribonucleoprotein C {ECO:0000255|HAMAP-Rule:MF_03153} |
| trEMBL | tr|V4VVV4|V4VVV4_9ROSI | 6.00E-68 | U1 small nuclear ribonucleoprotein C {ECO:0000256|HAMAP-Rule:MF_03153} |
| TAIR | AT4G03120 | 3.00E-47 | C2H2 and C2HC zinc fingers superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 1139675 | 1165655 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018498
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06220.11 | zf-U1 | 1 | 38 | 5.60E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11095 | SNRPC | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000387 | Biological Process | spliceosomal snRNP assembly |
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005685 | Cellular Component | U1 snRNP |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 64.180 |
| SRR2545915 | Juvenile tuber | 47.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 65.130 |
| SRR5643514 | five period of Gastrodia elata | 78.940 | |
| SRR5643515 | five period of Gastrodia elata | 73.230 | |
| SRR5643524 | five period of Gastrodia elata | 71.300 | |
| SRR5643525 | five period of Gastrodia elata | 104.560 | |
| SRR5643528 | five period of Gastrodia elata | 88.550 | |
| SRR5643658 | five period of Gastrodia elata | 84.980 | |
| SRR5643659 | five period of Gastrodia elata | 98.630 | |
| SRR5643660 | five period of Gastrodia elata | 116.320 | |
| SRR5643661 | five period of Gastrodia elata | 115.440 | |
| SRR5643662 | five period of Gastrodia elata | 118.360 | |
| SRR5643663 | five period of Gastrodia elata | 110.160 | |
| SRR5643664 | five period of Gastrodia elata | 117.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 82.620 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 204.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 87.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 81.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 84.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 79.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 95.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 75.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 99.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 95.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 104.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 104.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 112.72 |
| Juven | Juvenile tuber | 103.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 71.26 | |
| Mother_Juven | Mother tuber of Juvenile | 68.09 |