Detail information of GWHGAAEX018500/evm.TU.scaffold_95.38
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|124028426|ref|YP_001013746.1| | 3.00E-64 | 30S ribosomal protein S7P [Hyperthermus butylicus DSM 5456] |
| KOG | KOG3291 | 2.00E-128 | Ribosomal protein S7 |
| nr | gi|672138418|ref|XP_008792965.1| | 1.23E-132 | PREDICTED: 40S ribosomal protein S5 [Phoenix dactylifera] |
| Swissprot | tr|Q9ZUT9|RS51_ARATH | 6.00E-129 | 40S ribosomal protein S5-1 |
| trEMBL | tr|B3TLN7|B3TLN7_ELAGV | 5.00E-133 | 40S ribosomal protein S5 {ECO:0000313|EMBL:ACF06468.1} |
| TAIR | AT2G37270 | 2.00E-128 | ribosomal protein 5B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 1258384 | 1266972 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018500
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00177.20 | Ribosomal_S7 | 63 | 208 | 3.30E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02989 | RP-S5e, RPS5 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0015935 | Cellular Component | small ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 155.330 |
| SRR2545915 | Juvenile tuber | 238.720 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 245.650 |
| SRR5643514 | five period of Gastrodia elata | 291.340 | |
| SRR5643515 | five period of Gastrodia elata | 243.020 | |
| SRR5643524 | five period of Gastrodia elata | 283.420 | |
| SRR5643525 | five period of Gastrodia elata | 125.180 | |
| SRR5643528 | five period of Gastrodia elata | 175.410 | |
| SRR5643658 | five period of Gastrodia elata | 122.950 | |
| SRR5643659 | five period of Gastrodia elata | 288.870 | |
| SRR5643660 | five period of Gastrodia elata | 278.830 | |
| SRR5643661 | five period of Gastrodia elata | 311.900 | |
| SRR5643662 | five period of Gastrodia elata | 244.030 | |
| SRR5643663 | five period of Gastrodia elata | 262.030 | |
| SRR5643664 | five period of Gastrodia elata | 227.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 270.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 316.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 311.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 245.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 257.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 193.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 287.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 270.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 413.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 354.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 403.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 403.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 356.52 |
| Juven | Juvenile tuber | 350.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 121.99 | |
| Mother_Juven | Mother tuber of Juvenile | 179.12 |