Gene detail

Detail information of GWHGAAEX018505/evm.TU.scaffold_95.45

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743755773\|ref\|XP_010913344.1\|	PREDICTED: uncharacterized protein LOC105039060 [Elaeis guineensis]
trEMBL	tr\|M0T8Y8\|M0T8Y8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P21400_001}
TAIR	AT5G24710	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	1439921	1513454	+

Transcript Sequence
>GWHTAAEX018505 AATTTTTGCCCTCTGTGCGTCTCTCTTCCCGGAATCCGATTGAACTTATTACTGACACGCTCTCTCGAAAGAGCCTACTTTCGGTCTATTTGGATTTATAATCTTGACCCGTCTCCCTCTCTCTCTCCTCTCTCCCTCTCTCTCTCGGCACCACAGACCAGCTTTTCGAGCCTGGCGAGGATGATACCGGCACGTGAGCAAGAGGAGAAGATGTGATGGTGACAAGAACAAAGGGAGGCGACGCAGCTCTTCTAGGATGTACCGATTGCCGGGGTTAGCATGAAACCCGGAACATAGATCTGTGAAATATCGAACTTCAAACCTGCTTTATATTGCAATCCCGACTGAATTGACGGCGAGCAAGACAGAATGCTTCGATTAAGGGCATTCCGTCCTTCGGGCAGCAAGATCATCAAAATTCAGCTCCACCCCACCCATCCCTGGCTCGTGACTGCGGATGACTCTGATCACGTTTCCGTGTGGAATTGGGAGCACAGACAGGTGATCTATGAGCTGAAAGCTGGCGGGGTAGATGAAAGGCGTTTGGTTGGGGTGAAGCTGGAGAAGCTCGCTGAGGGAGAGTCTGAGTCTAGAAGAAAGCCCACAGAAGCTCTTTGGGGCGGGAGTGTAAAGCAAGTTAATTTTTATGACGATGATGTGCGATTTTGGCAACATTGGCGTAATCGATCTGCAGCTGCTGAGGGTCCATCTGCGATCAGCCAAAACTCTCCTTTTAATTCTCCTACACCAGCCACTCGTGGGAGGCATTTTCTTGCAATATGCTGTGAAAATAAAGCAATATTTTTGGATTTGGTGACAATGCGTGGCCGAGATGTTCCAAAGCTAGAACTTGACAACAAATCTCTTCTTTGTATGGAATTTCTCTCCAGATCTACTGCTGGTGATGCCCCTCTTGTTGCCTTTGGTTCTTCTGATGGAATAATAAGAGTTCTTTCAATGATAACATGGAAGCTTGTTCGTAGGTATACTGGTGGTCACAAGGGATCAATATCATGCTTAATGACATTTATGGCATCTTCTGGAGAGGCACTCTTAGTTTCTGGGGCTAGCGATGGCTTACTTATATTATGGAGCGTAGACCATCTTCATGATTCACGTGAACTTGTGCCAAAACTCAGCTTAAAGGCACATGATGGTGGAGTTGTGGCTGTTGAACTTTCAAGGGTAATGGGAAGCGCCCCACAGCTCATTTCAATAGGTGCAGATAAAACCTTAGCAATTTGGGATACTATCTCTTTTAAGGAACTGAGACGAATAAAGCCTGTTCCAAAGCTTGTTTGCCATAGTGTTGCTTCTTGGTGCCATCCCCGGGCACCAAATCTAGATATCCTTACTTGTGTCAAGGATTCTCACATTTGGGCTGTTGAGCATTCAACATATTCAGCTTTAACCAGGCCATTATGTGAGTTATCATCTCTTGTTCCTCCTCAAGTGCTCGCAACAACTAAGAAACTAAGGGTATATTGCATGGTTGCTCATCCATTGCAACCACATCTTGTTGCAACTGGTACCAATATTGGCGTTATACTTTGTGAGCTAGATGCAAGATCACTTCCAGCTGTTATTCCTCTGCCGTCACCTTCAGGAAGCAGAGAACACAGTGCAGTATATATTATTGAAAGAGAACTTAAGTTACTTAATTTTCAGCTTTCAAACATTTCAAATCCTTCTCTTGGAAGTACTGGATCCATATCTGATACAGGGAGATCTAGAGTAGAATCAACTGAGCCACTTGTGGTTAAGCAAATTAGGAAGCATATCAGCACACCTGCACCTCATGATTCATACTCAATTCTTTCTGCAAGCAGTTCTGGAAAGTATGTTTCCATTGTTTGGCCTGATATTCCATCATTTGTAATTTACAAGGCAAGTGATTGGTCCGTTGTTGATTCAGGGACTGGGAGACTATTTGCTTGGGATACTTGTCGTGATAGATATGCTTTAGTGGAAACTGGTTTGGCTCCAAGAATGCCAGTGATTCTTAAAGGAGGTTCATCTAAGAAGGCAAAGGAGGCACAAGCTGCAGCAGCTGCAGCAGCTGCTGCTGCTGCCAGTGCGGCTTCCTCTGCAACTGTTCAAGTTCGAATAATACTGGATGACGGGACTTCTCATGTGTTGACAAGGTCCATAGATGGTCGTAATGAGCCAGTTATTGGGTTGCATAGTGGTGCATTGCTTGGAGTTGCCTACAGAACATCAAGACGAATTACTCCTTCAGCTGCCACTGCAATTTCCACTCAATCAATGCCATTATCAGGATTTAGTTCTTTTTCTACAACTGATGATTTGAAGCAGCCCGGTGCTGAAGGAGCGCCTCAGAATTTTCAGTTATACAGCTGGGAAACGTTTCAATCTGTGAGTGGATTAATTTCACAACCAGAATGGACGGCGTGGGATCAAACAGTTGAGTATTGTGCTTTTGCTTACCAACAATATATTGTTATATCCTCTTTGCGTCCCCAGTTTAGATACCTTGGAGATGTGGCAATTCCATCTGCCACTGGTGCTGTTTGGCATCGTAGGCAGCTATTTGTTGTGACCCCAACAACTATTGAGTGTGTGTTTGTTGATGCCGGTATTGCACCTATTGATCTTGAAACTAAAAGAAGAAAAGAGGAAATGAAAGCCAAAGAAGTCCAAAGTAGAGCATTTAATGAACATGGTGAGCTGGCACTCATAACAGTTGAAAGTTCTGAAGTAACTGCCAAAGAAAGGGTGTCATTGAGGCCCCCAATGCTTCAGGTTGTTCGGTTAGCATCCTTTCAACATACTCCCTCAATACCTCCATTCATTACATTGCCCAAGCAGTCCAAAATAGATGGTGAGGACGCAGTTAGTCAGAAAGAGTCAGAGGAGAGAAAAACAAGTGAGGTTGCCGTAGCAGGTGGAGGGGTGTCTGTAGCGGTAACTCGTTTTCCTTATGAGCAGAAACGCCCTGCTGGACCTCTTGTTATTGTGGGTGTAAGAGATGGAGTTCTTTGGCTTATTGATAGATTTATGTGTGCTCACGCATTATCTCTTAGCCATCCGGGCATTCGCTGTCGCTGTCTTGCTGCCTATGGAGATGCTGTTAGTGCTGTGAAATGGGCAAGTAGGCTTGGTCGGGAGCATCATGATGACTTGGCTCAATTCATGCTTGGAATGGGCTACGCAACTGAAGCTCTTCATTTGCCAGGGATATCTAAAAGGTTGGAGTTTGATTTGGCTATGCAAAGTAATGACTTGAGAAGAGCATTGCAGTGCCTGTTAACAATGAGCAATAGTAGAGATGTTGGGCAAGAAAATGCAACCACAGATGTAACGGAGATTCTTAATCTAACGGCTGCAAAGCAAGAAAATCTCGTGGATGCCGTTCAGGGAATTGTGAAATTTGCAAAAGAATTCATGGATCTTATTGATGCTGCGGATGCTACTGGACAAGCTGATGTTGCTCGTGAAGCTCTTAAGAGATTAGCTGCTGCAGGGTCTGTAAAGGTTGCATTGCATGGGAAAGTTTTGAGGGGCGTGGCCCTGAGGCTTGCCAATCATGGAGAGCTTACAAGACTTTCGGGATTAGTGAATAATCTGATCACAGCCGGCCACGGGCGTGAAGCAGCATTCGCTGCTGCAGTTTTGGGAGACAATGCGCTTATGGGGAAGGCATGGCAGGATACGGGCATGCTTGCCGAGGCCGTCCTTCATGCTCATGCTCACGGTCGCCCGACACTGAAGGCTGTCGTCCAAGCATGGAACGAAATGCTACAGATGGAGCTTGGTCGCAAGCACGGAGTCAAAACTGATGCAGCTGCTGCGCTCCTGGCTTCTCTTGAAGATCCCAAACTAACTGCCCTTGGAGAAGCTCCAAAGAAGCCTCCTATAGAAATCCTCCCTCCGGGAATGCTGTCCCTGTCAGCCCCTTCTCTTGCTATTAAGAAGCCTGGGCCCGGCGGACCCACTGTTCTGGGCCCAAACTCACTGCCTCAGCCCATTAAGCCTTTGATGCTTGAAGCAGCAGAGGGCAGCATGGAGGCATCGTTGCATCAAGAGGCTCCCTCCGAGGAAGCGACAACAGCAACAGATGCTTCTCTGCAAATTGCTAAAGATAACACTGATGCTTCATTGAGTCCAGCAGCAGCAGCAGTAGCCATAGATATTGAAACTTCACAAGCTTTGATAACAGAGGCTCCTGCGATATTATCATCTCCTGTTGATCCGGCTGCATTTTAAAGGAACCTATTTGTTGTAAATTTTTTGTTTTTATGCGTTTATGAGAGATGGGTAATTTATTTTTTTAGAGGCTTCAGTTGAGTGGTCTGAGTGCTGATTCATTCTTTCAATTTTACTTCAAGCAGTTATAATTACTTTGTTATCTCTTTCACTTGTTCAATGATAAATTAAAGCAAAAGTTATAAAAATATATATTTCATGTGCTAAG

Network for GWHGAAEX018505

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX018505
MLRLRAFRPSGSKIIKIQLHPTHPWLVTADDSDHVSVWNWEHRQVIYELKAGGVDERRLVGVKLEKLAEGESESRRKPTEALWGGSVKQVNFYDDDVRFWQHWRNRSAAAEGPSAISQNSPFNSPTPATRGRHFLAICCENKAIFLDLVTMRGRDVPKLELDNKSLLCMEFLSRSTAGDAPLVAFGSSDGIIRVLSMITWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGASDGLLILWSVDHLHDSRELVPKLSLKAHDGGVVAVELSRVMGSAPQLISIGADKTLAIWDTISFKELRRIKPVPKLVCHSVASWCHPRAPNLDILTCVKDSHIWAVEHSTYSALTRPLCELSSLVPPQVLATTKKLRVYCMVAHPLQPHLVATGTNIGVILCELDARSLPAVIPLPSPSGSREHSAVYIIERELKLLNFQLSNISNPSLGSTGSISDTGRSRVESTEPLVVKQIRKHISTPAPHDSYSILSASSSGKYVSIVWPDIPSFVIYKASDWSVVDSGTGRLFAWDTCRDRYALVETGLAPRMPVILKGGSSKKAKEAQAAAAAAAAAAASAASSATVQVRIILDDGTSHVLTRSIDGRNEPVIGLHSGALLGVAYRTSRRITPSAATAISTQSMPLSGFSSFSTTDDLKQPGAEGAPQNFQLYSWETFQSVSGLISQPEWTAWDQTVEYCAFAYQQYIVISSLRPQFRYLGDVAIPSATGAVWHRRQLFVVTPTTIECVFVDAGIAPIDLETKRRKEEMKAKEVQSRAFNEHGELALITVESSEVTAKERVSLRPPMLQVVRLASFQHTPSIPPFITLPKQSKIDGEDAVSQKESEERKTSEVAVAGGGVSVAVTRFPYEQKRPAGPLVIVGVRDGVLWLIDRFMCAHALSLSHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLRRALQCLLTMSNSRDVGQENATTDVTEILNLTAAKQENLVDAVQGIVKFAKEFMDLIDAADATGQADVAREALKRLAAAGSVKVALHGKVLRGVALRLANHGELTRLSGLVNNLITAGHGREAAFAAAVLGDNALMGKAWQDTGMLAEAVLHAHAHGRPTLKAVVQAWNEMLQMELGRKHGVKTDAAAALLASLEDPKLTALGEAPKKPPIEILPPGMLSLSAPSLAIKKPGPGGPTVLGPNSLPQPIKPLMLEAAEGSMEASLHQEAPSEEATTATDASLQIAKDNTDASLSPAAAAVAIDIETSQALITEAPAILSSPVDPAAF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	42.400
SRP064423	SRR2545915	Juvenile tuber	47.840
SRP108465	SRR5643513	five period of Gastrodia elata	36.150
	SRR5643514	five period of Gastrodia elata	36.000
	SRR5643515	five period of Gastrodia elata	37.970
	SRR5643524	five period of Gastrodia elata	37.200
	SRR5643525	five period of Gastrodia elata	34.300
	SRR5643528	five period of Gastrodia elata	46.390
	SRR5643658	five period of Gastrodia elata	42.600
	SRR5643659	five period of Gastrodia elata	34.570
	SRR5643660	five period of Gastrodia elata	34.390
	SRR5643661	five period of Gastrodia elata	32.770
	SRR5643662	five period of Gastrodia elata	37.660
	SRR5643663	five period of Gastrodia elata	34.000
	SRR5643664	five period of Gastrodia elata	35.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.100
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.100
SRP279888	Gastro	Gastrodia elata tuber	31.70
	Juven	Juvenile tuber	43.78
	Mother_Gastro	Mother tuber of Gastrodia elata	49.42
	Mother_Juven	Mother tuber of Juvenile	56.10