Detail information of GWHGAAEX018512/evm.TU.scaffold_95.53
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-177 | FOG: PPR repeat |
| nr | gi|720099733|ref|XP_010248027.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Nelumbo nucifera] |
| Swissprot | tr|O04504|PPR27_ARATH | 7.00E-178 | Pentatricopeptide repeat-containing protein At1g09820 |
| trEMBL | tr|F6I4S5|F6I4S5_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB61912.1} |
| TAIR | AT1G09820 | 2.00E-177 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 1668134 | 1669972 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018512
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 230 | 278 | 9.00E-18 |
| PF12854.6 | PPR_1 | 299 | 331 | 2.70E-10 |
| PF13041.5 | PPR_2 | 337 | 386 | 1.40E-19 |
| PF12854.6 | PPR_1 | 407 | 433 | 4.90E-09 |
| PF13041.5 | PPR_2 | 443 | 490 | 4.80E-17 |
| PF12854.6 | PPR_1 | 509 | 540 | 5.70E-08 |
| PF13041.5 | PPR_2 | 548 | 593 | 1.10E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.710 |
| SRR2545915 | Juvenile tuber | 7.610 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.450 |
| SRR5643514 | five period of Gastrodia elata | 6.850 | |
| SRR5643515 | five period of Gastrodia elata | 8.840 | |
| SRR5643524 | five period of Gastrodia elata | 7.080 | |
| SRR5643525 | five period of Gastrodia elata | 6.160 | |
| SRR5643528 | five period of Gastrodia elata | 5.110 | |
| SRR5643658 | five period of Gastrodia elata | 4.080 | |
| SRR5643659 | five period of Gastrodia elata | 7.300 | |
| SRR5643660 | five period of Gastrodia elata | 7.560 | |
| SRR5643661 | five period of Gastrodia elata | 7.660 | |
| SRR5643662 | five period of Gastrodia elata | 8.590 | |
| SRR5643663 | five period of Gastrodia elata | 7.970 | |
| SRR5643664 | five period of Gastrodia elata | 5.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.960 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.61 |
| Juven | Juvenile tuber | 11.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 43.31 | |
| Mother_Juven | Mother tuber of Juvenile | 24.25 |