Detail information of GWHGAAEX018514/evm.TU.scaffold_95.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392382367|ref|YP_005031564.1| | 5.00E-70 | putative enoyl-CoA hydratase/isomerase [Azospirillum brasilense Sp245] |
| nr | gi|743795141|ref|XP_010924378.1| | 0 | PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Elaeis guineensis] |
| Swissprot | tr|Q9SHJ8|HIBC8_ARATH | 7.00E-174 | 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 |
| trEMBL | tr|M0TY26|M0TY26_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P06670_001} |
| TAIR | AT1G06550 | 4.00E-170 | ATP-dependent caseinolytic (Clp) protease/crotonase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000101 | 1684668 | 1705179 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX018514
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16113.4 | ECH_2 | 21 | 350 | 7.80E-104 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05605 | HIBCH | Metabolic pathways | map01100 |
| Carbon metabolism | map01200 | ||
| Propanoate metabolism | map00640 | ||
| Cysteine and methionine metabolism | map00270 | ||
| beta-Alanine metabolism | map00410 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003860 | Molecular Function | 3-hydroxyisobutyryl-CoA hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.660 |
| SRR2545915 | Juvenile tuber | 29.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 40.170 |
| SRR5643514 | five period of Gastrodia elata | 55.660 | |
| SRR5643515 | five period of Gastrodia elata | 42.150 | |
| SRR5643524 | five period of Gastrodia elata | 52.810 | |
| SRR5643525 | five period of Gastrodia elata | 38.120 | |
| SRR5643528 | five period of Gastrodia elata | 41.670 | |
| SRR5643658 | five period of Gastrodia elata | 40.530 | |
| SRR5643659 | five period of Gastrodia elata | 28.580 | |
| SRR5643660 | five period of Gastrodia elata | 23.280 | |
| SRR5643661 | five period of Gastrodia elata | 26.550 | |
| SRR5643662 | five period of Gastrodia elata | 19.880 | |
| SRR5643663 | five period of Gastrodia elata | 27.730 | |
| SRR5643664 | five period of Gastrodia elata | 19.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 39.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 55.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 57.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.38 |
| Juven | Juvenile tuber | 28.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 93.01 | |
| Mother_Juven | Mother tuber of Juvenile | 62.23 |