Gene detail

Detail information of GWHGAAEX018516/evm.TU.scaffold_95.57

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	1.00E-164	FOG: PPR repeat
nr	gi\|743773367\|ref\|XP_010917024.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Elaeis guineensis]
Swissprot	tr\|Q9ZVG8\|PPR60_ARATH	4.00E-165	Pentatricopeptide repeat-containing protein At1g26900, mitochondrial (Precursor)
trEMBL	tr\|A0A087HPC3\|A0A087HPC3_ARAAL	1.00E-163	Uncharacterized protein {ECO:0000313\|EMBL:KFK43975.1}
TAIR	AT1G26900	1.00E-164	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	1715880	1718423	-

Transcript Sequence
>GWHTAAEX018516 GGATCCTTTAAATAAATGGGTTATACACGGATAGCCATTTTATTGGTTCATCTTAAAGAGGCACATGGGTTGCTTCATAAACTAGAAAAATGTTGGCCGACAGTGACGGTGGCTGTGGCACCGCCGATGGAGAGTTAGATCCGATGCTCGCCGCTGTACATGACGAAGTTTTGCGTTGAGTAATTCATGAGGGCAAGTGACCGCGATGTTTTGATGAAGCTGCCTTCCCCGCTTCGCCTGCAAACCCTAAATCATCATCGCAGGCACAACGTCGTCACTAAGCTGCTCCGCGCCTGCGCCTCCGTCTCTGAGCTCCATGGAATCCATGCCTCCATGATCAAAGCCGGCATCGACCTCCTCCCCTTCCCCTCCGCCAGGCTTCTTTCTTCAGCCGCCCTTCTCGATTTAGATCACGCATTCTCCCTCTTCCGCCTCCTCCCTTCCCCGTCGCTCTTCTCCTTTAACTGCATTCTCCGATCCCTCTCTCTCTCCCTCCGCCCCAACCTTCCAGAAACCCTTTCCGTCTTCAACTCCATCAGATCCCTCCCCCTCCCCCTCGACCAGTTCTCCTTCATCGCCGTTCTCAAGACCTGCAGCCGCGTCCCGGCCGTCCGATCCGGCCAGCAGCTGCATTGTCTGGCAGCCAGGGCCGGCTTCGACCTCTTCCTCAATCTTCGAAACTCCCTCTTGCATTTCTACTGCACGTGCGGGGCGATCTTAGATGCGCACAAACTGTTCGCTGAGTTGCCCCTTCGAAGGGACGAGGTCTCCTTCAGCGCTTTAATGGGAGGGTTCCTCAGGGCTTCGCAGCCCGCAGAAGTTATCTCGTTTTTAAGGGGCATGCTCGAGTCTAGCGCGCAAGTTGGCCCCTCCGCCATCGTCATTGCTTTCTCTGCCGTTGCTGGTTGTAATATCAGCGGCGAGCCACTCCACTGCTACTGCCTAAAAACCGGGCTTGGCTGTGACCCCAAGGTGGCAACAGCAGCGGCAACTGTGTATGCCAAGGCCGGGACGATGGATCACGCGCATCAATTGTTCGATGAAATGCCCAAGAAAGATGTTGTGCTTTATAACTGCGTTATAGACGGGCATGCCAAAAAGGGATCATTGGACCGCTGCTTGGTTCTGCTGCAGCAGATGAAAGGAGAAGGAACGAGACCAAACGCCGCCACTTTTGTGGGGCTGCTGGCCCTCTGCGCATCCTCAGGATCGTTGGGCATTGGCCGGCGTATCCACGAGCTTGTGGAGAACGAGAAATTGGAAATGGAGGTTTCTCTAGGAACGGCTCTGGTGGACATGTACGCAAAAAACGGGTGCCTAGAGGAAGCAGTTTTAGTTTTTCGAAAGGTGCGGAATCCAGATGTCAAGGCTTGGACGGCCATGATCATGGGCTTTGCGGTTCACGGGAGGTCGGAGGATGCCCTGAGACTCTCTGACGAAATGGAGGAGAGCGGGCTGAGGCCTAATGAGGTCACCTTATTGGCTGTTCTCTCTGCTTGCTGCCACGGGGGATTGGTGAACAAGGGAAAAGAATACTTCAAGAGAGTTGTTCTAGAGTACAGGCTGTGCCCCGGGGTCAAGCACTATGGGTGCATTGTTGATTTGTTGGGGAGGGCTGGGCAGCTGCAAGAAGCTTATGAGTTAGTGAGAAGCCTTCCTTTTGGAGGGGATGCCATGGCTTGGAGAGCCTTGTTGGCAGCGTCCAGGGTTCACGGAGAAGCAAGGATGGGGAGGCTTGCCTTTGAAGCTTTGGCGGCTATGGGGGAGGAGCACCCAGGCGACACCGTGCTTCTGTCAGGCGGCTATGCCTTTGCTGGGAGATGGGGAGAAGCCAGGCAAGTGATGGATGTGGAGTTGGTGAAGGAAGAGGGAATGAGCCAGGAGGCAGGATGCAGCTCTATTGAGATGGTTGGTTTGTAGATTTTGGCAATTGTGAGGGTTAGATTGAATTTTTTTTGGAGGAAGTTCTGCCTCAATTGATACTGCTTGATTGGATAACCTGCATCAAAGTCTTCTTCACAGCAATACAATAAAGCAACAGAAATCATAGCTTCTCAAACACAGGGGAGCATATTATACTCTTGAGTATCAATAATAGTGGACTTAAATATTTCCAGATAAAAGATGAACCACTTAGTCTACAATCAGAAGCAGGAAGCAGTCGAAATCATATAATAAAACCAAATGCAGCTACAAACATCAAATCTTATATTTGCAAAGAGATGGGAGAAGAATAGAAAATAGGACTCGTAAATCTTCATTCCAGAAAAGGCAACAGACGAATTTGTTGTGTTGATATAAAATAATGTAATTATGCTCATAGATTGTTAATTTTAAAGAAACTATAATCTAAATCTTTTTTCATATGCATGTTTTGGGTTCTTGGAAGCAAGTGTTCTTCGGAATGATAAAATCTAAGTAATTATGCATCATAAAGTGGG

Network for GWHGAAEX018516

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	194	222	0.46
PF13041.5	PPR_2	290	337	4.70E-10
PF01535.19	PPR	366	388	0.0064
PF13041.5	PPR_2	391	440	2.30E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.350
SRP064423	SRR2545915	Juvenile tuber	2.530
SRP108465	SRR5643513	five period of Gastrodia elata	10.570
	SRR5643514	five period of Gastrodia elata	12.470
	SRR5643515	five period of Gastrodia elata	12.270
	SRR5643524	five period of Gastrodia elata	12.990
	SRR5643525	five period of Gastrodia elata	5.690
	SRR5643528	five period of Gastrodia elata	2.890
	SRR5643658	five period of Gastrodia elata	5.480
	SRR5643659	five period of Gastrodia elata	9.390
	SRR5643660	five period of Gastrodia elata	7.980
	SRR5643661	five period of Gastrodia elata	9.890
	SRR5643662	five period of Gastrodia elata	7.990
	SRR5643663	five period of Gastrodia elata	9.100
	SRR5643664	five period of Gastrodia elata	7.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.100
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.410
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.330
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.330
SRP279888	Gastro	Gastrodia elata tuber	8.14
	Juven	Juvenile tuber	5.46
	Mother_Gastro	Mother tuber of Gastrodia elata	3.38
	Mother_Juven	Mother tuber of Juvenile	2.07