Gene detail

Detail information of GWHGAAEX018525/evm.TU.scaffold_95.69

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	3.00E-39	FOG: Predicted E3 ubiquitin ligase
nr	gi\|672182607\|ref\|XP_008811553.1\|	1.18E-118	PREDICTED: probable E3 ubiquitin-protein ligase HIP1 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9ZQF9\|MBR1_ARATH	1.00E-33	E3 ubiquitin-protein ligase MBR1
trEMBL	tr\|Q5QLR6\|Q5QLR6_ORYSJ	7.00E-73	RING-finger protein-like {ECO:0000313\|EMBL:BAD73651.1}
TAIR	AT3G15070	3.00E-39	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000101	2006858	2009291	-

Transcript Sequence
>GWHTAAEX018525 ATGGGGCAGAGAAGCACACTATGTACGCATCAGATGTTTGATTTGGACTCGGAGCCAAATGATATTTGCCTTCATCACAATCATGGCTTTTTTACTGTTGGAAATGCTTCTGATCATACAACAAGTAGAAACAGTCATCCCGCACTTCCTGGTCATGGAAATAGCGTGGATCTTTTTCATCAACTAAGGGAATATCATGAGAGGGCCATGCTGCATGGGAATCAATACAACATTCAAAACTGCCATACTATTCAAAATCCTGGGTTAGGTGCTAATGGTCCGTTGAGCTTTTATAATTCTAATATGCTGCTTGCACCCGTTGGCAGAAATTTTCCCATTCATCAGAACAATGTAATGGTTGAGCAGTTATCTTCAGCTGCCAACCAAACAGATGGTGGAATTAACATGAATGAATTTGGCTGCCCTAATCATCTTATTGACACTGACAGAAGGCTTTGCAAAAGAAAGGAAACAGAATTGATTCCAGGTACCTATTGTAATGCTAATGGGTCAACAAGCTCTAACATAACAACAACTTGTCACTCTAGCTGTGCAGTGCCACTGTGGGGTCAACCTTATGAATTTGTCCCTGATATTATGGAACCAACTGGCTTTACTCCCCTGGAATATGGAAGGAGGGCTTCTCTGCCAAGGGCTGTAGGGTCTCAGAGAATTGTGAGGAGCAGATCAGTAACTGGAAGTCTACAGCCAGAGTCTGCAGTAGCACCTCAGCCAAATTGTTTACTTCCAGGATCGTATATGATGCACCCCATACAACCTTCCAATAATGCGTGGGTGTCACAGAATGGGAATGCTATTGTTGATGGTGGCATCAATTGGAATTACAGCAATTCTCTTAGATATTATTTTCAAGGGAGAAGGACAAATTTAGCGCATTTGCACCAGGATAGCACAAACCGGCAGCCATACACCGGGAATTCAACTGCCTCTAACTCTGCAATGCTCTTTCATCATCCATCTCCAATGCCTAATTTTCACCCAGCTGTCCATAATGCTCAACAAGCTCATGGCTATAATCTTCACTCTCGTATTCCAGTTCCATATCAGCACCCGGTTAACAATATGGGCTCCACCAATTCAAATTTTTCAGGCGATCGTATGGACACAGGATCAACATTCCCACACTTTCCTACAACGGTTGATCAAATTTATAGGCCTCTTCAACTACCACAGCCAGGTCATCAAATTTTCGGTGGCAGCTTAAGACTCCTGTCAGCAGAGGATGCTTCACTGATGGATCTCTCAGGATTTTATGGAGTTGGAAATGCCGTCGACCAGCATGGAGATATGAGACTGGATATAGATGACATGTCATACGAGGATCTTCTAGCTTTGGAGGAACAGATTGGGGTTGTGAAGACTGGGCTGGCAGAAGAGTTCATCATAAAGCATCTGAAGCTGAGGACTCACGTGCCTCGAGAAACAGCCCTTTCATTGTCACCCAGGTTGTCTGAAGAGAACGAAACGTGCAGCATATGCCAGGTGGAATACGAGGTGGACGAGGTCATTGGAGCCCTTGACTGCGGACACGCGTATCATGCCGAGTGCATAAAGCAGTGGCTGTTGATAAAGAATCTGTGCCCCATCTGCAAAACCTCAGCTCTGGCCAACAATAATAGCAGGGATGGGTGA

Network for GWHGAAEX018525

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	496	538	1.10E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	59.480
SRP064423	SRR2545915	Juvenile tuber	61.260
SRP108465	SRR5643513	five period of Gastrodia elata	61.770
	SRR5643514	five period of Gastrodia elata	65.860
	SRR5643515	five period of Gastrodia elata	75.380
	SRR5643524	five period of Gastrodia elata	67.930
	SRR5643525	five period of Gastrodia elata	60.700
	SRR5643528	five period of Gastrodia elata	65.230
	SRR5643658	five period of Gastrodia elata	61.900
	SRR5643659	five period of Gastrodia elata	58.270
	SRR5643660	five period of Gastrodia elata	57.180
	SRR5643661	five period of Gastrodia elata	64.820
	SRR5643662	five period of Gastrodia elata	57.860
	SRR5643663	five period of Gastrodia elata	59.020
	SRR5643664	five period of Gastrodia elata	52.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	56.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	68.700
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	59.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	64.800
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	70.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	58.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	55.600
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	59.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	59.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	66.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	66.240
SRP279888	Gastro	Gastrodia elata tuber	85.11
	Juven	Juvenile tuber	86.37
	Mother_Gastro	Mother tuber of Gastrodia elata	80.98
	Mother_Juven	Mother tuber of Juvenile	112.01