Detail information of GWHGAAEX018529/evm.TU.scaffold_95.76


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|237808227|ref|YP_002892667.1|9.00E-131aromatic amino acid aminotransferase [Tolumonas auensis DSM 9187]
KOGKOG14110Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2
nrgi|719982170|ref|XP_010250350.1|0PREDICTED: aspartate aminotransferase, cytoplasmic, partial [Nelumbo nucifera]
Swissprottr|P37833|AATC_ORYSJ0Aspartate aminotransferase, cytoplasmic
trEMBLtr|B4FUH2|B4FUH2_MAIZE0Aspartate aminotransferase {ECO:0000256|RuleBase:RU000480}
TAIRAT5G115200aspartate aminotransferase 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010121080952135771+
Transcript Sequence

Network for GWHGAAEX018529

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00155.20Aminotran_1_2794457.70E-94
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14454GOT1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Carbon fixation in photosynthetic organismsmap00710
Pyrimidine metabolismmap00240
Cysteine and methionine metabolismmap00270
Arginine biosynthesismap00220
Arginine and proline metabolismmap00330
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
Tryptophan metabolismmap00380
Isoquinoline alkaloid biosynthesismap00950

Gene Ontology

GO term OntologyName
GO:0009058Biological Processbiosynthetic process
GO:0006520Biological Processcellular amino acid metabolic process
GO:0003824Molecular Functioncatalytic activity
GO:0008483Molecular Functiontransaminase activity
GO:0030170Molecular Functionpyridoxal phosphate binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms82.340
SRR2545915Juvenile tuber110.980
SRP108465SRR5643513five period of Gastrodia elata256.210
SRR5643514five period of Gastrodia elata257.720
SRR5643515five period of Gastrodia elata241.970
SRR5643524five period of Gastrodia elata310.120
SRR5643525five period of Gastrodia elata70.760
SRR5643528five period of Gastrodia elata94.050
SRR5643658five period of Gastrodia elata68.620
SRR5643659five period of Gastrodia elata105.560
SRR5643660five period of Gastrodia elata107.510
SRR5643661five period of Gastrodia elata92.910
SRR5643662five period of Gastrodia elata87.160
SRR5643663five period of Gastrodia elata100.750
SRR5643664five period of Gastrodia elata82.700
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1156.080
SRR6049655Rhizomagastrodiae_C368-T10_good_1216.890
SRR6049656Rhizomagastrodiae_C368-T07_good_1157.950
SRR6049657Rhizomagastrodiae_C368-T07_good_1102.720
SRR6049658Rhizomagastrodiae_C368-T04_good_1111.520
SRR6049659Rhizomagastrodiae_C368-T04_good_1110.090
SRR6049660Rhizomagastrodiae_C368-T01_good_1144.850
SRR6049661Rhizomagastrodiae_C368-T04_good_1104.830
SRR6049662Rhizomagastrodiae_C368-T01_good_1240.960
SRR6049663Rhizomagastrodiae_C368-T01_good_1246.870
SRR6049664Rhizomagastrodiae_C368-T10_good_1242.360
SRR6049665Rhizomagastrodiae_C368-T10_good_1242.360
SRP279888GastroGastrodia elata tuber 183.75
JuvenJuvenile tuber734.01
Mother_GastroMother tuber of Gastrodia elata 250.12
Mother_JuvenMother tuber of Juvenile 565.91